CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOLI (Chorismate synthase OS=Escherichia coli (strain K12) GN=aroC PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOLC (Chorismate synthase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOL6 (Chorismate synthase OS=Escherichia coli O6 GN=aroC PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOL5 (Chorismate synthase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOK1 (Chorismate synthase OS=Escherichia coli O1:K1 / APEC GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOHS (Chorismate synthase OS=Escherichia coli O9:H4 (strain HS) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECODH (Chorismate synthase OS=Escherichia coli (strain K12 / DH10B) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOBW (Chorismate synthase OS=Escherichia coli (strain K12 / BW2952) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO8A (Chorismate synthase OS=Escherichia coli O8 (strain IAI1) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO81 (Chorismate synthase OS=Escherichia coli O81 (strain ED1a) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_ECOLI2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ECOLC2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain AT... [more]
AROC_ECOL62.657e-2472.00Chorismate synthase OS=Escherichia coli O6 GN=aroC... [more]
AROC_ECOL52.657e-2472.00Chorismate synthase OS=Escherichia coli O6:K15:H31... [more]
AROC_ECOK12.657e-2472.00Chorismate synthase OS=Escherichia coli O1:K1 / AP... [more]
AROC_ECOHS2.657e-2472.00Chorismate synthase OS=Escherichia coli O9:H4 (str... [more]
AROC_ECODH2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ECOBW2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain K1... [more]
AROC_ECO8A2.657e-2472.00Chorismate synthase OS=Escherichia coli O8 (strain... [more]
AROC_ECO812.657e-2472.00Chorismate synthase OS=Escherichia coli O81 (strai... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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