CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO5E (Chorismate synthase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO57 (Chorismate synthase OS=Escherichia coli O157:H7 GN=aroC PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO55 (Chorismate synthase OS=Escherichia coli (strain 55989 / EAEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO45 (Chorismate synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO27 (Chorismate synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO24 (Chorismate synthase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_CITK8 (Chorismate synthase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BRASO (Chorismate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=aroC PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/82 (65.85%), Postives = 60/82 (73.17%), Query Frame = -1 
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPPRIPL  A++Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPRIPLEAAEIQTDLDRRRPGQSRFTTQRQEPDQVKILSGVMADPDTGAQVTTGTPI 87
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBFM (Chorismate synthase OS=Vibrio fischeri (strain MJ11) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.470e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + L+EAD+QVDLDRR+PG S+ TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGLALGCIVDGCPPGLELTEADLQVDLDRRKPGTSKYTTQRREADEVKILSGVFEGKTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBF1 (Chorismate synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.470e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + L+EAD+QVDLDRR+PG S+ TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGLALGCIVDGCPPGLELTEADLQVDLDRRKPGTSKYTTQRREADEVKILSGVFEGKTTGTSI 81
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_ECO5E2.657e-2472.00Chorismate synthase OS=Escherichia coli O157:H7 (s... [more]
AROC_ECO572.657e-2472.00Chorismate synthase OS=Escherichia coli O157:H7 GN... [more]
AROC_ECO552.657e-2472.00Chorismate synthase OS=Escherichia coli (strain 55... [more]
AROC_ECO452.657e-2472.00Chorismate synthase OS=Escherichia coli O45:K1 (st... [more]
AROC_ECO272.657e-2472.00Chorismate synthase OS=Escherichia coli O127:H6 (s... [more]
AROC_ECO242.657e-2472.00Chorismate synthase OS=Escherichia coli O139:H28 (... [more]
AROC_CITK82.657e-2472.00Chorismate synthase OS=Citrobacter koseri (strain ... [more]
AROC_BRASO2.657e-2465.85Chorismate synthase OS=Bradyrhizobium sp. (strain ... [more]
AROC_VIBFM3.470e-2468.00Chorismate synthase OS=Vibrio fischeri (strain MJ1... [more]
AROC_VIBF13.470e-2468.00Chorismate synthase OS=Vibrio fischeri (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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