CX309004

Overview
NameCX309004
Unique NameCX309004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_SYNP6 (Chorismate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.720e-27
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FG  FR++TFGESHGGGVG +IDGCPPR+ +SEA++Q +LDRRRPGQS+ITTPRKE D C+I SGV +G T  TPI +
Sbjct:    5 FGHLFRISTFGESHGGGVGVVIDGCPPRLEISEAEIQFELDRRRPGQSKITTPRKEADQCEILSGVVDGKTLDTPIAI 82          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_GRABC (Chorismate synthase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=aroC PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.324e-26
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPP IPL+EAD+Q  LDRRRPGQSR TT R+E D  +I SG  EGVTTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPAIGCVVDGCPPGIPLTEADIQPALDRRRPGQSRFTTQRREADQVRILSGTFEGVTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_GLUDA (Chorismate synthase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=aroC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.259e-26
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTT+GESHG  +GC++DGCPPR+PLSEAD+Q  LDRRRPGQS+ TT R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGHLFRVTTWGESHGPAIGCVVDGCPPRLPLSEADIQPWLDRRRPGQSKFTTQRQEPDAVEILSGVFEGQTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_SYNS3 (Chorismate synthase OS=Synechococcus sp. (strain CC9311) GN=aroC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.079e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FR++TFGESHGGGVG I+DGCPPR+ L    +Q DLDRRRPGQSRITTPRKE D  +I SG+ +GVT GTPI
Sbjct:    5 FGKLFRISTFGESHGGGVGVIVDGCPPRLKLDLEAIQADLDRRRPGQSRITTPRKEADQVEILSGLLDGVTLGTPI 80          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_SYNPW (Chorismate synthase OS=Synechococcus sp. (strain WH7803) GN=aroC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.403e-25
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FGT FR++TFGESHGGGVG I++GCPPR+ L    +Q +LDRRRPGQS+ITTPRKE D  +I SGV +G+T GTPI
Sbjct:    5 FGTLFRISTFGESHGGGVGVILEGCPPRLELDPLAIQAELDRRRPGQSKITTPRKEADQVEILSGVMDGLTLGTPI 80          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_METI4 (Chorismate synthase OS=Methylacidiphilum infernorum (isolate V4) GN=aroC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.403e-25
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = -1
Query:    1 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVF 237
            FG  FR+TT+GESHG GVG +IDGCPPRIPLSE D+Q +LDRRRPGQS+ITT RKE D   I SG   G+T GTPI ++
Sbjct:    5 FGHLFRITTWGESHGKGVGVVIDGCPPRIPLSEEDIQKELDRRRPGQSKITTQRKERDIAAILSGTFNGMTLGTPIMIW 83          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_CELJU (Chorismate synthase OS=Cellvibrio japonicus (strain Ueda107) GN=aroC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.403e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            +G  F VTTFGESHG  +GCI+DGCPP + LSE D+Q+DLDRR+PGQSR TT R+E D  KI SGV EG TTGTPI
Sbjct:    6 YGKLFTVTTFGESHGAALGCIVDGCPPGLELSEQDIQIDLDRRKPGQSRYTTQRREDDQVKILSGVFEGKTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_ACICJ (Chorismate synthase OS=Acidiphilium cryptum (strain JF-5) GN=aroC PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.403e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTT+GESHG  +GC++DG PPRIPLSEAD+Q  LDRRRPGQSR TT R+E D  +I SGV  GVTTGTP+
Sbjct:    6 FGHLFRVTTWGESHGPAIGCVVDGVPPRIPLSEADIQPFLDRRRPGQSRFTTQRREPDIVRILSGVHGGVTTGTPV 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHORT (Chorismate synthase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=aroC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.139e-25
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = -1
Query:    4 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 237
            FGT FR T+FGESHG  +GC+++G PP IPL+ AD+Q DLDRR+PGQSR TT R+E D  +I SGV EGVTTGTPI V
Sbjct:    6 FGTLFRFTSFGESHGPAIGCVVEGVPPGIPLTAADLQHDLDRRKPGQSRFTTQRREDDAAEILSGVYEGVTTGTPIAV 83          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHOP5 (Chorismate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=aroC PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.139e-25
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV       E VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPLIPLTEADIQGDLDRRRPGQSRFTTQRQEADQVKILSGVMAHPVSGEQVTTGTPI 87          
The following BLAST results are available for this feature:
BLAST of CX309004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_SYNP65.720e-2767.95Chorismate synthase OS=Synechococcus sp. (strain A... [more]
AROC_GRABC6.324e-2669.74Chorismate synthase OS=Granulibacter bethesdensis ... [more]
AROC_GLUDA8.259e-2669.74Chorismate synthase OS=Gluconacetobacter diazotrop... [more]
AROC_SYNS31.079e-2569.74Chorismate synthase OS=Synechococcus sp. (strain C... [more]
AROC_SYNPW2.403e-2567.11Chorismate synthase OS=Synechococcus sp. (strain W... [more]
AROC_METI42.403e-2567.09Chorismate synthase OS=Methylacidiphilum infernoru... [more]
AROC_CELJU2.403e-2568.42Chorismate synthase OS=Cellvibrio japonicus (strai... [more]
AROC_ACICJ2.403e-2569.74Chorismate synthase OS=Acidiphilium cryptum (strai... [more]
AROC_RHORT3.139e-2566.67Chorismate synthase OS=Rhodospirillum rubrum (stra... [more]
AROC_RHOP53.139e-2568.29Chorismate synthase OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionC21007C01Rv AbsLeaSub1 Citrus clementina cDNA clone C21007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309004 ID=CX309004; Name=CX309004; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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