CX309004

Overview
NameCX309004
Unique NameCX309004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPP (Chorismate synthase OS=Yersinia pestis (strain Pestoides F) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPN (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPG (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPE (Chorismate synthase OS=Yersinia pestis GN=aroC PE=3 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPB (Chorismate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERPA (Chorismate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERP3 (Chorismate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_COLP3 (Chorismate synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VT+FGESHG G+G IIDGCPP + L+EAD+Q+DLDRRRPG SR TT R+E D  KI SGV EG TTGTPI
Sbjct:    6 FGKLFTVTSFGESHGLGLGAIIDGCPPGLELTEADLQIDLDRRRPGTSRYTTARREADEVKILSGVFEGKTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_YERE8 (Chorismate synthase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.558e-24
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SG+ EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRREPDQVRILSGIFEGVTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHOPS (Chorismate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.558e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPLIPLTEADIQGDLDRRRPGQSRFTTQRQEADQVKIVSGVMAHPESGAQVTTGTPI 87          
The following BLAST results are available for this feature:
BLAST of CX309004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_YERPP1.193e-2470.67Chorismate synthase OS=Yersinia pestis (strain Pes... [more]
AROC_YERPN1.193e-2470.67Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERPG1.193e-2470.67Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERPE1.193e-2470.67Chorismate synthase OS=Yersinia pestis GN=aroC PE=... [more]
AROC_YERPB1.193e-2470.67Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_YERPA1.193e-2470.67Chorismate synthase OS=Yersinia pestis bv. Antiqua... [more]
AROC_YERP31.193e-2470.67Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_COLP31.193e-2469.74Chorismate synthase OS=Colwellia psychrerythraea (... [more]
AROC_YERE81.558e-2469.33Chorismate synthase OS=Yersinia enterocolitica ser... [more]
AROC_RHOPS1.558e-2467.07Chorismate synthase OS=Rhodopseudomonas palustris ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007C01Rv AbsLeaSub1 Citrus clementina cDNA clone C21007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309004 ID=CX309004; Name=CX309004; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
back to top