CX309004

Overview
NameCX309004
Unique NameCX309004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_VIBVY (Chorismate synthase OS=Vibrio vulnificus (strain YJ016) GN=aroC PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + +SEAD+Q DLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLEISEADLQTDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_VIBVU (Chorismate synthase OS=Vibrio vulnificus GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + +SEAD+Q DLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLEISEADLQTDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHOPT (Chorismate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHLFRVTTFGESHGVAIGCVVDGCPPLIPLTEADIQGDLDRRRPGQSRFTTQRQEADQVKILSGVMVHPETGVQVTTGTPI 87          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHOPA (Chorismate synthase OS=Rhodopseudomonas palustris GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHLFRVTTFGESHGVAIGCVVDGCPPLIPLTEADIQGDLDRRRPGQSRFTTQRQEADQVKILSGVMVHPETGVQVTTGTPI 87          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_RHOP2 (Chorismate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPLIPLTEADIQGDLDRRRPGQSRFTTQRQEADQVKILSGVMAHPETGVQVTTGTPI 87          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_OLICO (Chorismate synthase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSE----GVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPPRIPL+ A++Q DLDRR+PGQSR TT R+E D  KI SGV E     VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVALGCVVDGCPPRIPLTAAEIQRDLDRRKPGQSRFTTQRQEADQVKILSGVMETERGQVTTGTPI 85          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_MARAV (Chorismate synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 53/76 (69.74%), Postives = 58/76 (76.32%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG  +GCIIDGCPP + LSE DMQ DLDRR+PG SR TT R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGKLFTVTTFGESHGAALGCIIDGCPPGLELSEEDMQRDLDRRKPGTSRHTTQRREADEVRILSGVFEGKTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_HALHL (Chorismate synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FGT F VTTFGESHG  +G ++DGCPP + L+EAD+QV+LDRRRPG+S+ TT R+E+D  +I SGV EGVTTGTPI
Sbjct:    6 FGTLFTVTTFGESHGPALGGVVDGCPPGLALTEADLQVELDRRRPGRSKHTTQRRESDQVQILSGVFEGVTTGTPI 81          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_BRAJA (Chorismate synthase OS=Bradyrhizobium japonicum GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPP IPL+EAD+Q DLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPMIPLTEADIQGDLDRRRPGQSRFTTQRQEPDQVKILSGVMAHPETGVQVTTGTPI 87          
BLAST of CX309004 vs. ExPASy Swiss-Prot
Match: AROC_AERS4 (Chorismate synthase OS=Aeromonas salmonicida (strain A449) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.034e-24
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRVTTFGESHG  +G ++DGCPP + +SEAD+Q+DLDRR+PG SR TTPR+E D  KI SGV EG TTGT I
Sbjct:    6 FGQLFRVTTFGESHGLALGAVVDGCPPGLEISEADLQIDLDRRKPGTSRYTTPRREPDEVKILSGVFEGRTTGTSI 81          
The following BLAST results are available for this feature:
BLAST of CX309004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_VIBVY2.034e-2469.33Chorismate synthase OS=Vibrio vulnificus (strain Y... [more]
AROC_VIBVU2.034e-2469.33Chorismate synthase OS=Vibrio vulnificus GN=aroC P... [more]
AROC_RHOPT2.034e-2467.07Chorismate synthase OS=Rhodopseudomonas palustris ... [more]
AROC_RHOPA2.034e-2467.07Chorismate synthase OS=Rhodopseudomonas palustris ... [more]
AROC_RHOP22.034e-2467.07Chorismate synthase OS=Rhodopseudomonas palustris ... [more]
AROC_OLICO2.034e-2467.50Chorismate synthase OS=Oligotropha carboxidovorans... [more]
AROC_MARAV2.034e-2469.74Chorismate synthase OS=Marinobacter aquaeolei (str... [more]
AROC_HALHL2.034e-2467.11Chorismate synthase OS=Halorhodospira halophila (s... [more]
AROC_BRAJA2.034e-2467.07Chorismate synthase OS=Bradyrhizobium japonicum GN... [more]
AROC_AERS42.034e-2467.11Chorismate synthase OS=Aeromonas salmonicida (stra... [more]

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Properties
Property NameValue
Genbank descriptionC21007C01Rv AbsLeaSub1 Citrus clementina cDNA clone C21007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309004 ID=CX309004; Name=CX309004; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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