CX309020

Overview
NameCX309020
Unique NameCX309020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig180 contig Ccv1_Contig180:21..345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_ROSS1 (Nucleoside diphosphate kinase OS=Roseiflexus sp. (strain RS-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.397e-11
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME++ I++KPD VQRGL+G I+ R E++G  + G+KLM +D   A +HY     K FF SLI
Sbjct:    1 MERSLIILKPDAVQRGLIGPILTRIEQRGLRIVGMKLMQIDESLARRHYAIHEGKAFFDSLI 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_TREPS (Nucleoside diphosphate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E TF+M+KP  +QR LVGE++ RFE+KG  L  L+L+ VD   AE HY +   KPF+ SLI
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLI 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_TREPA (Nucleoside diphosphate kinase OS=Treponema pallidum GN=ndk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            E TF+M+KP  +QR LVGE++ RFE+KG  L  L+L+ VD   AE HY +   KPF+ SLI
Sbjct:    4 ETTFVMLKPGVLQRRLVGEVLSRFERKGLVLTALRLLCVDTATAELHYAEHREKPFYPSLI 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METMJ (Nucleoside diphosphate kinase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.437e-11
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 321
            M++TF+M+KPDGVQRGLVGEI+ RFE KG  L G KL  +      + Y +   KPFF  L
Sbjct:    1 MDRTFVMVKPDGVQRGLVGEIVSRFEAKGLKLVGAKLELLPEGRVVEQYREHLEKPFFPGL 61          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METS5 (Nucleoside diphosphate kinase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  142 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ++TF+MIKPDGV+R L+GEI+ R E+KG  +  +K++ +DR  A K YE+   K FF  L+
Sbjct:    4 QKTFVMIKPDGVRRKLIGEIVGRIERKGLRIAAMKMVKIDRETANKLYEEHIGKSFFNELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_DEHE1 (Nucleoside diphosphate kinase OS=Dehalococcoides ethenogenes (strain 195) GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+T +++KPDGV RGL GEI+ R EK G  + GL+++ +D   A+KHY     +PFF  L+
Sbjct:    1 MERTLLLVKPDGVNRGLSGEILGRMEKLGLKMIGLRMLQMDAVLADKHYAPHRERPFFKDLV 62          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_AERPE (Nucleoside diphosphate kinase OS=Aeropyrum pernix GN=ndk PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.795e-11
Identity = 27/62 (43.55%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            +++T +++KPDGV+RGL+GE++ R E+KG  +  +K+M + R  AE+ Y     KPFFG L+
Sbjct:    3 VQRTLLVVKPDGVERGLIGEVVSRVERKGLKIVAMKMMRLTREKAEEFYSVHRDKPFFGELV 64          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_PARD8 (Nucleoside diphosphate kinase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFF 312
            ME+T +++KP  VQRGL+GEI+ RFEKKG  L G+K++ +      +HY  L  KPFF
Sbjct:    1 MEKTLVILKPCTVQRGLIGEIVTRFEKKGLRLAGMKMVWLTDEILSEHYAHLKEKPFF 58          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_METHJ (Nucleoside diphosphate kinase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 321
            ME+TF+M+KPDGVQRGL+GE+I RFE++GF +   +   +      +HY +   KPFF  L
Sbjct:    1 MERTFLMVKPDGVQRGLIGEVITRFERRGFKMVASRFEKLPDARVMEHYAEHVQKPFFPGL 61          
BLAST of CX309020 vs. ExPASy Swiss-Prot
Match: NDK_FERNB (Nucleoside diphosphate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=ndk PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.884e-11
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  139 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLI 324
            ME+TF+++KP+ V+RGLVGEI+ RFE++G  + GLK + + R  AEK YE    K F+  L+
Sbjct:    1 MERTFVILKPNAVRRGLVGEILKRFEQRGIKIVGLKFLKMTREQAEKLYEPHKGKQFYDELL 62          
The following BLAST results are available for this feature:
BLAST of CX309020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
NDK_ROSS13.397e-1148.39Nucleoside diphosphate kinase OS=Roseiflexus sp. (... [more]
NDK_TREPS4.437e-1152.46Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_TREPA4.437e-1152.46Nucleoside diphosphate kinase OS=Treponema pallidu... [more]
NDK_METMJ4.437e-1152.46Nucleoside diphosphate kinase OS=Methanoculleus ma... [more]
NDK_METS55.795e-1147.54Nucleoside diphosphate kinase OS=Metallosphaera se... [more]
NDK_DEHE15.795e-1146.77Nucleoside diphosphate kinase OS=Dehalococcoides e... [more]
NDK_AERPE5.795e-1143.55Nucleoside diphosphate kinase OS=Aeropyrum pernix ... [more]
NDK_PARD87.568e-1150.00Nucleoside diphosphate kinase OS=Parabacteroides d... [more]
NDK_METHJ7.568e-1147.54Nucleoside diphosphate kinase OS=Methanospirillum ... [more]
NDK_FERNB9.884e-1148.39Nucleoside diphosphate kinase OS=Fervidobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC21007D09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309020 ID=CX309020; Name=CX309020; organism=Citrus clementina; type=EST; length=325bp
GCGGGGGATTAGGGTTACGATTCAGCGTTTCTTTACATATATACTCACTT
GCAAAACGGCAAGCTCATTCTCTCGCATGTGTGCTGTGCTATTTCACTCA
ATTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACT
TTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAAT
CATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTA
TGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCG
AAGCCTTTCTTTGGTTCTCTGATTG
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