CX309021

Overview
NameCX309021
Unique NameCX309021
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309021 vs. ExPASy Swiss-Prot
Match: NAC61_ARATH (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana GN=NAC061 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.113e-23
Identity = 57/134 (42.54%), Postives = 83/134 (61.94%), Query Frame = -3
Query:  169 LPPGFRFHPTDVELIKYYLKRKVMGRKFGFEAIAEV-DIYKHAPWDLPDKSSLRS-GDLK-WYFFCPREKKYANGARMNRATEFGYWKTTGKDRPV-QYNNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRIDE 558
            L  GFRF+PT+VEL+ YYL+ ++ G      ++  + D++   P  LP+ +  R  GD + W FF PR+++ A G R +R T  GYWK TG   PV   +N V+G+ KT+VF+ GKAP G +T W M+EY+  E
Sbjct:    5 LSVGFRFYPTEVELLTYYLRIQLGGGNATIHSLIPILDVFSVEPTQLPNLAGERCRGDAEQWIFFVPRQEREARGGRPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKAVE 138          
BLAST of CX309021 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.315e-20
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = -3
Query:  181 PPGFRFHPTDVELIKYYLKRKVMGRKFGF--EAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQY---NNEVVGMIKTLVFHRGKAPRGDRTDWVMHEY 555
            P GFRF PTD E++  YL+ K +        E I+ VDI    PWDLP  S +++ D  WYFF  +E KY  G R  R T+ G+WK TG    +     + E +G  + LVF   K   G ++DW MHEY
Sbjct:    4 PVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY 130          
BLAST of CX309021 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.315e-20
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = -3
Query:  100 PPGFRFHPTDVELIKYYLKRKVMGRKFGF--EAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQYNNEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRIDEPGLSERGVVQDAYVLCIVFQKDG 555
            P G RF PTD E++  YL  K   R        I  V + +  PW+LP +S ++  D+ W FF P+E KY  G +  R T+ G+WK+TG+ +P+  N + +G  K L+F+  K     ++DWV+HEY     G S   ++   Y LC V    G
Sbjct:    4 PVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKDVAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKE---SKSDWVIHEYH----GFSHNQMMM-TYTLCKVMFNGG 149          
BLAST of CX309021 vs. ExPASy Swiss-Prot
Match: NAC1_ARATH (NAC domain-containing protein 1 OS=Arabidopsis thaliana GN=NAC001 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.697e-16
Identity = 56/153 (36.60%), Postives = 78/153 (50.98%), Query Frame = -3
Query:  121 GFRFHPTDVELIKYYLKRKVMGR--KFGFEAIAEVDIYKHAPWDLPDKSSLRSGDLKWYFFCPREKKYANGARMNRATEFGYWKTTGKDRPVQYN--------NEVVGMIKTLVFHRGKAPRGDRTDWVMHEYRIDEPGLSERGVVQDAYVLC 549
            GF F P D EL+ +YL+ K+ G   +    AI+EV+I  + PW+L  +S  +S D  WYFF  RE     G R +R T  G WK TG+   V+             +G  + LVF  G+ P   ++DWV+HE+  D   L E    Q  YV+C
Sbjct:    6 GFGFRPNDEELVGHYLRNKIEGNTSRDVEVAISEVNICSYDPWNLRFQSKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQWGFCSEGFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHYDL--LPEH---QRTYVIC 151          
The following BLAST results are available for this feature:
BLAST of CX309021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
NAC61_ARATH7.113e-2342.54Putative NAC domain-containing protein 61 OS=Arabi... [more]
NAC5_ARATH4.315e-2040.77NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC3_ARATH4.315e-2035.71NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC1_ARATH1.697e-1636.60NAC domain-containing protein 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC21007D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309021 ID=CX309021; Name=CX309021; organism=Citrus clementina; type=EST; length=599bp
AGCAGAGGAGATAACATCCACACAATCAACATCCTCATCATTTTCCCAGT
CTTCCTCTCTAAATGGTGCTCCATATTGGGCGCCATTCCTAGGGCCTGGA
CCATCCTTCTGAAAAACAATACAGAGCACGTATGCATCCTGAACAACTCC
TCTTTCAGAAAGACCAGGTTCATCAATTCTATACTCATGCATCACCCAGT
CCGTTCGATCACCACGTGGGGCTTTACCCCTGTGAAAAACCAAAGTCTTA
ATCATCCCCACTACTTCATTATTGTATTGAACAGGTCTATCCTTTCCAGT
AGTTTTCCAATAACCAAACTCAGTGGCACGATTCATCCTAGCTCCGTTTG
CATATTTCTTCTCTCGTGGGCAAAAGAAATACCACTTCAGATCCCCACTC
CTCAAACTAGATTTGTCTGGTAAATCCCAAGGAGCGTGCTTGTAAATGTC
AACTTCAGCAATGGCCTCAAATCCAAATTTCCTACCCATTACTTTCCTCT
TCAAATAATACTTGATCAGTTCAACATCGGTTGGATGAAATCGAAACCCC
GGAGGTAGAGACGTTTTTCCCATAGAGAAAATTGGATGGAATATCTCAA
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