CX309022

Overview
NameCX309022
Unique NameCX309022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: AB15C_ARATH (Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.162e-17
Identity = 43/99 (43.43%), Postives = 63/99 (63.64%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG--LETFVKESGISFSVGQRQLICLARALLKSS 292
            TI++D ++I    + DLR R  ++PQ   LF+G++R NLDP     D +IW  L+KC + + + A    L+  V E+G ++SVGQRQL+CL R LLK S
Sbjct:  843 TIVIDNVDITKIGLHDLRSRLGIIPQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKLDATVVENGENWSVGQRQLVCLGRVLLKKS 941          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP9_HUMAN (Multidrug resistance-associated protein 9 OS=Homo sapiens GN=ABCC12 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.130e-17
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 292
            TI +D ++I    + DLR +  V+PQ P LF G++R NLDPF  + D  +W VLE+  +++ +  +   L+  V E+G +FSVG+RQL+C+ARALL++S
Sbjct: 1177 TIFIDEVDICILSLEDLRTKLTVIPQDPVLFVGTVRYNLDPFESHTDEMLWQVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCVARALLRNS 1275          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCCE_DICDI (ABC transporter C family member 14 OS=Dictyostelium discoideum GN=abcC14 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.130e-17
Identity = 41/98 (41.84%), Postives = 67/98 (68.37%), Query Frame = -3
Query:    5 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS-FSVGQRQLICLARALLKS 289
            IL+DG++I    ++ LR    +VPQ PF+F G++R N+DPF+   D +IW  +EK  +K+ + +  + LET ++E+G + FS GQ+QL+CL R +LK+
Sbjct: 1129 ILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFEIWESIEKVKLKDAINSMPLKLETALQENGDNGFSYGQKQLLCLCRTILKN 1226          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC9_RABIT (ATP-binding cassette transporter sub-family C member 9 OS=Oryctolagus cuniculus GN=ABCC9 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.130e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF GS+R NLDP     D ++W  LE   +K  V+++  GL+  V E G +FSVGQRQL CLARA ++ S
Sbjct: 1370 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLSGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 1467          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC9_HUMAN (ATP-binding cassette transporter sub-family C member 9 OS=Homo sapiens GN=ABCC9 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.130e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF GS+R NLDP     D ++W  LE   +K  V+++  GL+  V E G +FSVGQRQL CLARA ++ S
Sbjct: 1370 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 1467          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MDR_LEITA (Multidrug resistance protein OS=Leishmania tarentolae GN=PGPA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = -3
Query:    8 GWTILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLK 298
            G  I V+G  +    +RD+R  F+++PQ P LF+G++R N+DPF      ++W+ LE   ++E V  E+ G+++ V E G ++SVGQRQL+C+ARALLK
Sbjct: 1341 GGVIHVNGREMSAYGLRDVRRHFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1439          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC9_RAT (ATP-binding cassette transporter sub-family C member 9 OS=Rattus norvegicus GN=Abcc9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF GS+R NLDP     D ++W  LE   +K  V+++  GL+  V E G +FSVGQRQL CLARA ++ S
Sbjct: 1366 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDATVTEGGENFSVGQRQLFCLARAFVRKS 1463          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC9_MOUSE (ATP-binding cassette transporter sub-family C member 9 OS=Mus musculus GN=Abcc9 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF GS+R NLDP     D ++W  LE   +K  V+++  GL+  V E G +FSVGQRQL CLARA ++ S
Sbjct: 1367 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDATVTEGGENFSVGQRQLFCLARAFVRKS 1464          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC6_DICDI (ABC transporter C family member 6 OS=Dictyostelium discoideum GN=abcC6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.394e-17
Identity = 41/98 (41.84%), Postives = 67/98 (68.37%), Query Frame = -3
Query:    5 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS-FSVGQRQLICLARALLKS 289
            IL+DG++I    ++ LR    +VPQ PF+F G++R N+DPF+   D +IW  +EK  +K+ + +  + LET ++E+G + FS GQ+QL+CL R +LK+
Sbjct: 1159 ILIDGIDISKVQLQKLRSSIGIVPQDPFIFTGTIRSNIDPFNEFTDFEIWESVEKVKLKDAINSMPLKLETALQENGDNGFSYGQKQLLCLCRTILKN 1256          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: YH85_SCHPO (Uncharacterized ABC transporter ATP-binding protein/permease C359.05 OS=Schizosaccharomyces pombe GN=SPBC359.05 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +D  +I    + DLR R +++PQ   +FEG++R+NLDP H   D KIW VLE   +K  +  +  GL + V E G +FS GQRQLICLAR LL S+
Sbjct: 1284 IEIDNEDITKFGLYDLRSRLSIIPQESQIFEGNIRENLDPNHRLTDKKIWEVLEIASLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTST 1381          
The following BLAST results are available for this feature:
BLAST of CX309022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AB15C_ARATH3.162e-1743.43Putative ABC transporter C family member 15 OS=Ara... [more]
MRP9_HUMAN4.130e-1743.43Multidrug resistance-associated protein 9 OS=Homo ... [more]
ABCCE_DICDI4.130e-1741.84ABC transporter C family member 14 OS=Dictyosteliu... [more]
ABCC9_RABIT4.130e-1744.90ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_HUMAN4.130e-1744.90ATP-binding cassette transporter sub-family C memb... [more]
MDR_LEITA5.394e-1743.43Multidrug resistance protein OS=Leishmania tarento... [more]
ABCC9_RAT5.394e-1744.90ATP-binding cassette transporter sub-family C memb... [more]
ABCC9_MOUSE5.394e-1744.90ATP-binding cassette transporter sub-family C memb... [more]
ABCC6_DICDI5.394e-1741.84ABC transporter C family member 6 OS=Dictyostelium... [more]
YH85_SCHPO1.202e-1646.94Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionC21007D12Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309022 ID=CX309022; Name=CX309022; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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