CX309022

Overview
NameCX309022
Unique NameCX309022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: AB8C_ARATH (ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = -3
Query:    8 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLK 289
            IL+DG++I    ++DLR + +++PQ P LF G +R NLDP  +  D +IW  LEKC +K  +  +  +   + V + G ++SVGQRQL CL R LLK
Sbjct: 1103 ILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWKALEKCQLKTTISNLPNKLDSSEVSDEGENWSVGQRQLFCLGRVLLK 1199          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: AB12C_ARATH (ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 41/98 (41.84%), Postives = 64/98 (65.31%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++D  ++    + D+R   +++PQSP LF G++R N+DPF  ++D  +W  L + H+K+ +     GL+  V E G +FSVGQRQL+ LARALL+ S
Sbjct: 1293 IMIDDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALHRAHIKDVISRNPFGLDAEVCEGGENFSVGQRQLLSLARALLRRS 1390          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP9_MOUSE (Multidrug resistance-associated protein 9 OS=Mus musculus GN=Abcc12 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 41/99 (41.41%), Postives = 67/99 (67.68%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 292
            TI++D ++I    + DLR +  ++PQ P LF G++R NLDP   + D  +W VLE+  +++ +  +   L+  V E+G +FSVG+RQL+C+ARALL++S
Sbjct: 1184 TIIIDEVDICTVGLEDLRTKLTMIPQDPVLFVGTVRYNLDPLGSHTDEMLWHVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCMARALLRNS 1282          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: AB5C_ARATH (ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.677e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +D ++I    + DLR R  ++PQ P LFEG++R NLDP   + D KIW  L+K  + + V    + L++ V E+G ++SVGQRQL+ L RALLK +
Sbjct: 1326 ITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIRANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALLKQA 1423          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC8_HUMAN (ATP-binding cassette transporter sub-family C member 8 OS=Homo sapiens GN=ABCC8 PE=1 SV=5)

HSP 1 Score: 83.5741 bits (205), Expect = 3.496e-16
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF G++R NLDP     D  +W  LE   +K  V+A+  GL+  + E G +FS GQRQL CLARA ++ +
Sbjct: 1402 IIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPERKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKT 1499          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC8_RAT (ATP-binding cassette transporter sub-family C member 8 OS=Rattus norvegicus GN=Abcc8 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF G++R NLDP     D  +W  LE   +K  V+A+  GL+  + E G +FS GQRQL CLARA ++ +
Sbjct: 1403 IIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKT 1500          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC8_CRICR (ATP-binding cassette transporter sub-family C member 8 OS=Cricetus cricetus GN=ABCC8 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I   P+  LR R +++ Q P LF G++R NLDP     D  +W  LE   +K  V+A+  GL+  + E G +FS GQRQL CLARA ++ +
Sbjct: 1403 IIIDGIDIAKLPLHTLRSRLSIILQDPVLFSGTIRFNLDPEKKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENFSQGQRQLFCLARAFVRKT 1500          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: YCFI_YEAST (Metal resistance protein YCF1 OS=Saccharomyces cerevisiae GN=YCF1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.789e-16
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV---GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++D + I    + DLR + +++PQ   +FEG++R+N+DP +   D  IW  LE  H+KE V ++   GL+  + E G + SVGQRQL+CLARA+L  S
Sbjct: 1330 IVIDNIAINEIGLYDLRHKLSIIPQDSQVFEGTVRENIDPINQYTDEAIWRALELSHLKEHVLSMSNDGLDAQLTEGGGNLSVGQRQLLCLARAMLVPS 1428          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP9_RAT (Multidrug resistance-associated protein 9 OS=Rattus norvegicus GN=Abcc12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 292
            TI +D ++I    + +LR +  ++PQ P LF G++R NLDP   + D  +W VLE+  +++ +  +   L+  V E+G +FSVG+RQL+C+ARALL++S
Sbjct: 1184 TIFIDEVDICTVGLEELRTKLTMIPQDPVLFVGTVRYNLDPLGSHTDEMLWHVLERTFMRDTIMKLPEKLQAEVTENGENFSVGERQLLCMARALLRNS 1282          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABC2_SCHPO (ATP-binding cassette transporter abc2 OS=Schizosaccharomyces pombe GN=abc2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = -3
Query:   11 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALL 289
            I +D +NI +  + DLR R A++PQ    FEG++R+NLDP     D +IW  LE   +K+ ++ +  GL + V E G + S GQRQL+CL RALL
Sbjct: 1297 IQLDDINITSIGLHDLRSRLAIIPQENQAFEGTIRENLDPNANATDEEIWHALEAASLKQFIQTLDGGLYSRVTEGGANLSSGQRQLMCLTRALL 1391          
The following BLAST results are available for this feature:
BLAST of CX309022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AB8C_ARATH1.202e-1643.30ABC transporter C family member 8 OS=Arabidopsis t... [more]
AB12C_ARATH1.202e-1641.84ABC transporter C family member 12 OS=Arabidopsis ... [more]
MRP9_MOUSE2.050e-1641.41Multidrug resistance-associated protein 9 OS=Mus m... [more]
AB5C_ARATH2.677e-1643.88ABC transporter C family member 5 OS=Arabidopsis t... [more]
ABCC8_HUMAN3.496e-1641.84ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_RAT4.566e-1641.84ATP-binding cassette transporter sub-family C memb... [more]
ABCC8_CRICR4.566e-1641.84ATP-binding cassette transporter sub-family C memb... [more]
YCFI_YEAST7.789e-1642.42Metal resistance protein YCF1 OS=Saccharomyces cer... [more]
MRP9_RAT1.017e-1540.40Multidrug resistance-associated protein 9 OS=Rattu... [more]
ABC2_SCHPO5.049e-1544.21ATP-binding cassette transporter abc2 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionC21007D12Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309022 ID=CX309022; Name=CX309022; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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