CX309022

Overview
NameCX309022
Unique NameCX309022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC7_DICDI (ABC transporter C family member 7 OS=Dictyostelium discoideum GN=abcC7 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.594e-15
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = -3
Query:    5 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKS 292
            +I +DG++I    +  LR    + PQ PF+F G++R N+DPF +  D +IW  LEK  +KE +    + ++T + E   + S GQ+QL+CL R LLKS
Sbjct: 1140 SIHIDGIDISKISLSKLRNSIGICPQEPFIFSGTIRKNIDPFGIYSDSEIWLALEKVKLKETISLLPMKIDTIIHEQA-NLSFGQKQLLCLTRVLLKS 1236          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCCF_DICDI (ABC transporter C family member 15 OS=Dictyostelium discoideum GN=abcC15 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.612e-15
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = -3
Query:    2 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSS 292
            +IL+DG +I    ++ LR    +VPQ PF+F GS+R NLDPF    D +IW  L K  +K+ V    + LE+ V + G   ++G +QL+CL RA+L++S
Sbjct: 1250 SILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLV-QGGDGLTIGNKQLLCLCRAILRNS 1347          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC9_DICDI (ABC transporter C family member 9 OS=Dictyostelium discoideum GN=abcC9 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.469e-14
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = -3
Query:    5 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFVKESG-ISFSVGQRQLICLARALLKS 292
            +IL+DG++I    +  LRG   +VPQ P+LF G++R N+DP +  DD  IW+ LE   +K+ +    + L + + E+G  + S GQ+QL+CL R L+K+
Sbjct: 1160 SILIDGIDIKTIDLNKLRGSLGIVPQEPWLFSGTIRSNIDPLNQYDDEMIWNYLEMVKLKKLIIEMPLKLNSKIHENGNTTLSYGQKQLLCLCRCLIKN 1258          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP6_HUMAN (Multidrug resistance-associated protein 6 OS=Homo sapiens GN=ABCC6 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.522e-14
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+ I +  +  LR R +++PQ P LF GSLR NLD    + D  IW+ LE   +K  V ++   L+    + G   SVGQ+QL+CLARALL+ +
Sbjct: 1323 IWIDGVPIAHVGLHTLRSRISIIPQDPILFPGSLRMNLDLLQEHSDEAIWAALETVQLKALVASLPGQLQYKCADRGEDLSVGQKQLLCLARALLRKT 1420          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = -3
Query:   11 TILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA---------------------VGLETFVKESGISFSVGQRQLICLARALL 292
            TI +D  +I + P+  LR   + +PQ P LF+G++R NLDPF    D++I+ VL K  + EE +                      + L T VK  G + S GQRQL+CLAR++L
Sbjct: 1342 TITIDNKDIKHIPLERLRNSISCIPQDPTLFDGTVRSNLDPFDRYSDVQIYGVLSKVGLIEECDELCLIFEQEQPNFSSHKLRNRFIDLNTVVKSGGSNLSQGQRQLLCLARSML 1456          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: ABCC5_DICDI (ABC transporter C family member 5 OS=Dictyostelium discoideum GN=abcC5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = -3
Query:    8 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSVGQRQLICLARALLK 289
            I++DGL+I    ++DLR + A++PQ P +F G+LR NLD    + D ++W VL++  + E V+ V     GL+  V +   ++S GQ+QLI L RALLK
Sbjct: 1268 IIIDGLDISKIGLKDLRSQLAIIPQEPVMFTGTLRSNLDSLSEHTDSELWDVLKEIQLYEHVKKVSVADEGLDLRVND---NWSQGQKQLIGLGRALLK 1363          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP6_RAT (Multidrug resistance-associated protein 6 OS=Rattus norvegicus GN=Abcc6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+ I +  +  LR R  ++PQ P LF GSLR NLD    N D  IW+ LE   +K  V ++   L+      G   SVGQ+QL+CLARALL+ +
Sbjct: 1322 IWIDGVPITDMGLHTLRSRITIIPQDPVLFPGSLRMNLDLLQENTDEGIWAALETVQLKAFVTSLPGQLQYECSGQGDDLSVGQKQLLCLARALLRKT 1419          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: BPT1_YEAST (Bile pigment transporter 1 OS=Saccharomyces cerevisiae GN=BPT1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.618e-13
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-------------------GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I++DG++I +  + DLR   A++PQ    FEG+++ NLDPF+   + ++   +E+ H+K  +E +                    L+  + E+G + SVGQRQL+CLARALL  S
Sbjct: 1360 IIIDGIDISDIGLFDLRSHLAIIPQDAQAFEGTVKTNLDPFNRYSEDELKRAVEQAHLKPHLEKMLHSKPRGDDSNEEDGNVNDILDVKINENGSNLSVGQRQLLCLARALLNRS 1474          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: YOR1_YEAST (Oligomycin resistance ATP-dependent permease YOR1 OS=Saccharomyces cerevisiae GN=YOR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.345e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK--CHVKEEVEAV-----------------GLETFVKESGISFSVGQRQLICLARALLKSS 289
            IL+D ++I    + DLR + A++PQ P LF G++R NLDPF+   D ++W  L +     K+++  V                  L+  V+E G +FS+G+RQL+ L RAL++ S
Sbjct: 1271 ILIDNVDISQLGLFDLRRKLAIIPQDPVLFRGTIRKNLDPFNERTDDELWDALVRGGAIAKDDLPEVKLQKPDENGTHGKMHKFHLDQAVEEEGSNFSLGERQLLALTRALVRQS 1385          
BLAST of CX309022 vs. ExPASy Swiss-Prot
Match: MRP6_MOUSE (Multidrug resistance-associated protein 6 OS=Mus musculus GN=Abcc6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.345e-12
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG+ I +  +  LR R  ++PQ P LF GSLR NLD    + D  IW+ LE   +K  V ++   L+      G   SVG +QL+CLARALL+ +
Sbjct: 1318 IWIDGVPITHVGLHTLRSRITIIPQDPVLFPGSLRMNLDLLQEHTDEGIWAALETVQLKAFVTSLPGQLQYECAGQGDDLSVGHKQLLCLARALLRKT 1415          
The following BLAST results are available for this feature:
BLAST of CX309022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
ABCC7_DICDI6.594e-1539.80ABC transporter C family member 7 OS=Dictyostelium... [more]
ABCCF_DICDI8.612e-1541.41ABC transporter C family member 15 OS=Dictyosteliu... [more]
ABCC9_DICDI1.469e-1439.39ABC transporter C family member 9 OS=Dictyostelium... [more]
MRP6_HUMAN9.522e-1441.84Multidrug resistance-associated protein 6 OS=Homo ... [more]
NFT1_YEAST1.244e-1336.52ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]
ABCC5_DICDI1.244e-1341.41ABC transporter C family member 5 OS=Dictyostelium... [more]
MRP6_RAT1.624e-1342.86Multidrug resistance-associated protein 6 OS=Rattu... [more]
BPT1_YEAST3.618e-1334.78Bile pigment transporter 1 OS=Saccharomyces cerevi... [more]
YOR1_YEAST2.345e-1234.78Oligomycin resistance ATP-dependent permease YOR1 ... [more]
MRP6_MOUSE2.345e-1240.82Multidrug resistance-associated protein 6 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC21007D12Rv AbsLeaSub1 Citrus clementina cDNA clone C21007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309022 ID=CX309022; Name=CX309022; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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