CX309040

Overview
NameCX309040
Unique NameCX309040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:205..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.647e-15
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPT-GTDYKVVFCP 147
            CC  G CGPT  S+FFK R PD YSYP+DD TSTFTC +  TDYKV+FCP
Sbjct:  178 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFCP 227          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.475e-14
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +CGPT  S+FFK R PD YSYP+DD  S FTCP GT+Y+VVFCP
Sbjct:  176 CCTNGPGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFCP 226          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPT-GTDYKVVFCP 147
            CC  G CGPT  S++FK R PD YSYP+DD TSTFTC +  TDYKV+FCP
Sbjct:  178 CCTQGPCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 227          
BLAST of CX309040 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRGPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +C  T +S+FFK R PD YSYP+DD TSTFTC T T+Y+VVFCP
Sbjct:  174 CCTNGQGSCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223          
The following BLAST results are available for this feature:
BLAST of CX309040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
OS35_SOLCO8.647e-1568.00Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
PRR2_TOBAC1.475e-1464.71Pathogenesis-related protein R minor form OS=Nicot... [more]
OLPA_TOBAC4.291e-1466.00Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
OSL3_ARATH1.380e-1262.75Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC21007F09Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309040 ID=CX309040; Name=CX309040; organism=Citrus clementina; type=EST; length=378bp
TGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAA
GGATAGGGGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCA
CATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGA
AGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGACATAG
CCTTCTATATCTGTTATAATATTGGAATAAGGACGTGTGGTCTTCACTGC
CATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACTATAAT
TTGTCCGTGAATTAAAAGGAGAATAACTGANAAAAAAAAAAAAAAAAAAA
AAAGTTAAAAAAAAAAAAAAAAAAAAAA
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