CX309041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.000e-12 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3 Query: 2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289 I +DG++ PV+ R F V+PQ F+F GS R NLDP+ D ++W V E+ +K +E L+ + + G S G RQL+CLAR++L + Sbjct: 1269 IRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKA 1366
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.824e-12 Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -3 Query: 2 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----------AVGLETFVKESGISFSVGQRQLICLARALLKSS 283 VDG++I + + LR R +++PQ P L G++R NLDPF D ++ +L+ + V+ A+ L+T V G++FS GQRQ++ LARAL++ S Sbjct: 1240 VDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKS 1343
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11 Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 Query: 2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289 I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D ++W V ++ +K +E L+ + ++G S G +QLICLAR++L + Sbjct: 1265 IQIDGVSWDSVPLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDAGCVLSHGHKQLICLARSVLSKA 1362
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11 Identity = 33/98 (33.67%), Postives = 60/98 (61.22%), Query Frame = -3 Query: 2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289 I +DG++ + P+++ R F V+PQ F+F G+ R NLDP+ +D +IW V ++ ++ +E L+ + + G S G +QL+CLAR++L+ + Sbjct: 1270 IQIDGVSWDSIPLQEWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKA 1367
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.423e-11 Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = -3 Query: 2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289 I VDG++ + V+ R F V+PQ F+F G+ R NLDP+ +D +IW V ++ ++ +E L+ + + G S G +QL+CLAR++L + Sbjct: 1269 IQVDGVSWESVTVQQWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKA 1366
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.777e-11 Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = -3 Query: 2 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 283 +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D ++W V ++ +K +E L+ + + G S G +QLICLAR++L + Sbjct: 1271 IDGVSWDSIPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDGGYVLSHGHKQLICLARSVLSKA 1366
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: YWJA_BACSU (Uncharacterized ABC transporter ATP-binding protein ywjA OS=Bacillus subtilis GN=ywjA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11 Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = -3 Query: 5 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS 289 I +DG++I + + LRG+ VV Q FLF G+LR+N+ + + IW +++ H++E V + GL+T + E G+ S GQ+Q + +AR LK+ Sbjct: 390 ITIDGISIKDMTLSSLRGQIGVVQQDVFLFSGTLRENIAYGRLGASEEDIWQAVKQAHLEELVHNMPDGLDTMIGERGVKLSGGQKQRLSIARMFLKN 487
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11 Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = -3 Query: 2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289 I +DG++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K +E L + + G S G +QL+CLAR++L + Sbjct: 1277 IQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKA 1374 The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bpback to top |