CX309041

Overview
NameCX309041
Unique NameCX309041
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length300
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6239 contig Ccv1_Contig6239:394..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_ORNAN (Cystic fibrosis transmembrane conductance regulator OS=Ornithorhynchus anatinus GN=CFTR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.000e-12
Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG++    PV+  R  F V+PQ  F+F GS R NLDP+    D ++W V E+  +K  +E     L+  + + G   S G RQL+CLAR++L  +
Sbjct: 1269 IRIDGISWDAVPVQQWRKAFGVIPQKVFIFSGSFRKNLDPYGQWTDQELWKVAEEVGLKSVIEQFPGQLDFVLIDGGYVLSHGHRQLMCLARSVLSKA 1366          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: ABC1_SCHPO (ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.824e-12
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = -3
Query:    2 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----------AVGLETFVKESGISFSVGQRQLICLARALLKSS 283
            VDG++I +  +  LR R +++PQ P L  G++R NLDPF    D ++  +L+    +  V+          A+ L+T V   G++FS GQRQ++ LARAL++ S
Sbjct: 1240 VDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKS 1343          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_TRIVU (Cystic fibrosis transmembrane conductance regulator OS=Trichosurus vulpecula GN=CFTR PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG++  + P++  R  F V+PQ  F+F G+ R NLDP+    D ++W V ++  +K  +E     L+  + ++G   S G +QLICLAR++L  +
Sbjct: 1265 IQIDGVSWDSVPLQQWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDAGCVLSHGHKQLICLARSVLSKA 1362          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_CANFA (Cystic fibrosis transmembrane conductance regulator OS=Canis familiaris GN=CFTR PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 33/98 (33.67%), Postives = 60/98 (61.22%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG++  + P+++ R  F V+PQ  F+F G+ R NLDP+   +D +IW V ++  ++  +E     L+  + + G   S G +QL+CLAR++L+ +
Sbjct: 1270 IQIDGVSWDSIPLQEWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGYVLSHGHKQLMCLARSVLRKA 1367          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_RHIFE (Cystic fibrosis transmembrane conductance regulator OS=Rhinolophus ferrumequinum GN=CFTR PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.423e-11
Identity = 34/98 (34.69%), Postives = 57/98 (58.16%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I VDG++  +  V+  R  F V+PQ  F+F G+ R NLDP+   +D +IW V ++  ++  +E     L+  + + G   S G +QL+CLAR++L  +
Sbjct: 1269 IQVDGVSWESVTVQQWRRAFGVIPQKVFIFSGTFRKNLDPYGQWNDQEIWKVADEVGLRSVIEQFPGNLDFVLVDGGFVLSHGHKQLMCLARSVLSKA 1366          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_DIDMA (Cystic fibrosis transmembrane conductance regulator OS=Didelphis marsupialis virginiana GN=CFTR PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.777e-11
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = -3
Query:    2 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 283
            +DG++  + P++  R  F V+PQ  F+F G+ R NLDP+    D ++W V ++  +K  +E     L+  + + G   S G +QLICLAR++L  +
Sbjct: 1271 IDGVSWDSIPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGQWSDHELWKVADEVGLKSVIEQFPGKLDFVLVDGGYVLSHGHKQLICLARSVLSKA 1366          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: YWJA_BACSU (Uncharacterized ABC transporter ATP-binding protein ywjA OS=Bacillus subtilis GN=ywjA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = -3
Query:    5 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS 289
            I +DG++I +  +  LRG+  VV Q  FLF G+LR+N+    +   +  IW  +++ H++E V  +  GL+T + E G+  S GQ+Q + +AR  LK+
Sbjct:  390 ITIDGISIKDMTLSSLRGQIGVVQQDVFLFSGTLRENIAYGRLGASEEDIWQAVKQAHLEELVHNMPDGLDTMIGERGVKLSGGQKQRLSIARMFLKN 487          
BLAST of CX309041 vs. ExPASy Swiss-Prot
Match: CFTR_SQUAC (Cystic fibrosis transmembrane conductance regulator OS=Squalus acanthias GN=CFTR PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = -3
Query:    2 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 289
            I +DG++  +  ++  R  F V+PQ  F+F G+ R NLDP+    D +IW V E+  +K  +E     L   + + G   S G +QL+CLAR++L  +
Sbjct: 1277 IQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDEEIWKVTEEVGLKSMIEQFPDKLNFVLVDGGYILSNGHKQLMCLARSILSKA 1374          
The following BLAST results are available for this feature:
BLAST of CX309041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CFTR_ORNAN4.000e-1237.76Cystic fibrosis transmembrane conductance regulato... [more]
ABC1_SCHPO6.824e-1236.54ATP-binding cassette transporter abc1 OS=Schizosac... [more]
CFTR_TRIVU1.520e-1134.69Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_CANFA1.520e-1133.67Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_RHIFE4.423e-1134.69Cystic fibrosis transmembrane conductance regulato... [more]
CFTR_DIDMA5.777e-1134.38Cystic fibrosis transmembrane conductance regulato... [more]
YWJA_BACSU9.853e-1135.71Uncharacterized ABC transporter ATP-binding protei... [more]
CFTR_SQUAC9.853e-1134.69Cystic fibrosis transmembrane conductance regulato... [more]

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Properties
Property NameValue
Genbank descriptionC21007F11Rv AbsLeaSub1 Citrus clementina cDNA clone C21007F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309041 ID=CX309041; Name=CX309041; organism=Citrus clementina; type=EST; length=300bp
TAGAAGACTTGAGAAGAGCACGTGCAAGACATATAAGCTGCCTTTGCCCA
ACAGAAAATGAAATCCCAGATTCCTTCACAAACGTCTCCAGTCCCACTGC
TTCTACTTCCTCTTTGACATGGCATTTCTCCAAAACACTCCAGATTTTTA
AGTCATCATTCATGTGAAATGGGTCTAAATTATCCCTTAAAGACCCCTCA
AACAAGAAGGGGCTCTGTGGAACAACAGCAAACCGTCCCCGGAGATCTCT
CACAGGAGTATTGATTATGTTGAGTCCATCCACCAAAATTGTCCACCCCG
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