CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TD+  RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S  D  IL  ++  +   I E+P  +
Sbjct:  323 GDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIKILRDIEQYYSTQIDEMPMNV 404          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 40/83 (48.19%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + Y HR+GR+GRFG KG+AI FV +  D  +L  +Q  + V I+ELP  +
Sbjct:  329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFV-TREDERMLFDIQKFYNVVIEELPANV 410          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.596e-17
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R+LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + S +D   L +++     +IK +P  ID S Y+
Sbjct:  316 GKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYNLYKIEQELGTEIKPIPATIDKSLYV 403          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.085e-17
Identity = 40/83 (48.19%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI  V+   D  +L  +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTK-DDERMLFDIQKFYNVVIEELPANV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.085e-17
Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+G +GRFG KG++I FV+   D  +L  +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTK-DDERMLFDIQKFYNVVIEELPANV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.085e-17
Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L+ TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV++  D  IL  ++  +   I E+P  I
Sbjct:  309 GNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTN-EDVRILRDIEQYYSTVIDEMPMNI 390          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 38/80 (47.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G  R+L+ TD++ RGID+++V++VINYD+P   + Y+HR+GR+GRFG KG+AI FV + SD  IL  ++  +   I E+P
Sbjct:  320 GENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKN-SDIRILRDIEQFYSTQIDEMP 398          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 38/83 (45.78%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ RIL++TDL+ RGID+++V++VINYD+P++ + Y+HR+GR GRFG KG+AI  V+     D + +++  +   I+ELP  I
Sbjct:  310 GSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGD-MRELERFYSTQIEELPANI 391          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 36/85 (42.35%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 261
            G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++S SD   + +++  + + I  +P  + T
Sbjct:  314 GHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITS-SDLSKMKEIEKYYRIKISPVPADLST 397          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P QID S Y+
Sbjct:  322 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELNTEIAPIPSQIDKSLYV 409          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
RH2_ARATH1.596e-1745.78DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_WHEAT1.596e-1748.19Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
DHH1_DEBHA1.596e-1749.44ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
IF4A2_NICPL2.085e-1748.19Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF411_TOBAC2.085e-1746.99Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
FAL1_SCHPO2.085e-1746.99ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
IF4A_DICDI2.723e-1747.50Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A_ASHGO2.723e-1745.78ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
FAL1_VANPO2.723e-1742.35ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DHH1_KLULA2.723e-1748.31ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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