CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.805e-30
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 279
            KRILVATD+ GRGID+ERVN+VINYD P  AD+YLHRVGRAGRFGTKGLAI+FVSS +D ++L ++Q RF V I  LPE +D +TYM S
Sbjct:  354 KRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYMTS 442          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 3.101e-29
Identity = 59/89 (66.29%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+FV S  D ++L ++Q+RF+V I E PE+ +D+STYM
Sbjct:  342 NKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 430          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.909e-29
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FV+S  D ++L Q++ RFEV + E P E ID STYM
Sbjct:  344 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQIEKRFEVALPEFPKEGIDASTYM 432          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.178e-28
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGL I+FVS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  343 NKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.539e-28
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYMPS 279
            NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGLA++FV++  D ++L  ++ RFEV I E P+  ID STYM S
Sbjct:  346 NKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYMAS 436          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.625e-28
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+ V S  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  343 NKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.625e-28
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLA++ VS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  345 NKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 433          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.429e-28
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  352 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.429e-28
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE+ +D+STYM
Sbjct:  362 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTPEDEQVLKDIEKRFEVALPEYPEEGVDSSTYM 450          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.429e-28
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  359 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
SUB2_CRYNE2.805e-3069.66ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_PICGU3.101e-2966.29ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
SUB2_CHAGB6.909e-2968.54ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
SUB2_LODEL1.178e-2865.17ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_MAGGR1.539e-2865.93ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
SUB2_PICST2.625e-2865.17ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_DEBHA2.625e-2864.04ATP-dependent RNA helicase SUB2 OS=Debaryomyces ha... [more]
SUB2_NEOFI3.429e-2866.29ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_EMENI3.429e-2865.17ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB2_ASPFU3.429e-2866.29ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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