CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.478e-28
Identity = 60/89 (67.42%), Postives = 71/89 (79.78%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGL+I+FVSS  D   L  ++ RFEV + E PE+ +D STYM
Sbjct:  354 NKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGVDASTYM 442          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.849e-28
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  349 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 437          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.638e-28
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  352 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.976e-28
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVSS  D ++L  ++ RFEV + E P+  +D+S YM
Sbjct:  353 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 441          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  352 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 273
            NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  351 NKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.702e-27
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYDMP  AD YLHRVGRAGRFGTKGLAI+ VSS  D ++L ++Q RF+V I E PE+ +D STY+
Sbjct:  349 KRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKDDEEVLAKIQERFDVKITEFPEEGVDPSTYL 436          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.903e-27
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYDMP+ AD YLHRVGRAGRFGTKGLAI+ +SS  D  +L ++Q RF+V I E PE+ +D STY+
Sbjct:  348 KRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYL 435          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  357 KRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 58/88 (65.91%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  357 KRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
SUB2_COCIM4.478e-2867.42ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPTN5.849e-2866.29ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
SUB2_ASPCL7.638e-2865.17ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_AJECN9.976e-2865.17ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB2_ASPOR1.303e-2765.17ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPNC1.303e-2765.17ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_ASHGO1.702e-2765.91ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
SUB2_KLULA2.903e-2764.77ATP-dependent RNA helicase SUB2 OS=Kluyveromyces l... [more]
SUB2_YEAST3.791e-2765.91ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_YEAS73.791e-2765.91ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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