CX309046
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27 Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1 Query: 13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMPS 279 KRI V+TD+ GRGIDIER+N+ INYD+P AD YLHRVGRAGRFGTKGLAI+FVS+ D ++L ++Q RFEV+I P E +D STYM S Sbjct: 352 KRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYMNS 441
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27 Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1 Query: 13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273 KRI V+TD+ GRGIDIER+N+ INYD+ AD YLHRVGRAGRFGTKGLAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+ Sbjct: 353 KRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 440
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27 Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1 Query: 13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273 KRI V+TD+ GRGIDIER+N+ INYD+ AD YLHRVGRAGRFGTKGLAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+ Sbjct: 352 KRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 439
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.466e-27 Identity = 57/88 (64.77%), Postives = 73/88 (82.95%), Query Frame = 1 Query: 13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273 KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVS+ D ++L+++Q RF+V I E PE+ ID STY+ Sbjct: 350 KRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 437
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.474e-26 Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 1 Query: 10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTY 270 NKRI VATD+ GRGID+ ++N+ INYD+P AD+YLHRVGRAGRFGTKGLAI+FVS+ +D ++L V+ RFEV + E PE +D++ Y Sbjct: 353 NKRICVATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAY 440
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26 Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1 Query: 16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273 RI V+TD+ GRGID+ER+N+ INYDMPD AD YLHRVGRAGRFGTKGL+I+FVSS D +L ++ RF +I E PE I +++YM Sbjct: 350 RICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYM 436
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20 Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273 G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L++++A + I ELP +D + Y+ Sbjct: 316 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20 Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273 G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L++++A + I ELP +D + Y+ Sbjct: 316 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 7.656e-20 Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273 G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L ++++ + I+ELP +D + Y+ Sbjct: 317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIEELP--VDFAAYL 402
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 9.999e-20 Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1 Query: 7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273 G+ R+LV TDLV RGID+ VNIVIN+D+P + ++YLHR+GR GR+G KG+AI FV+ D ++L ++++ + I ELP +D + Y+ Sbjct: 317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIDELP--VDFAAYL 402 The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 482
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bpback to top |