CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMPS 279
            KRI V+TD+ GRGIDIER+N+ INYD+P  AD YLHRVGRAGRFGTKGLAI+FVS+  D ++L ++Q RFEV+I   P E +D STYM S
Sbjct:  352 KRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYMNS 441          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYD+   AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  353 KRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 440          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.791e-27
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYD+   AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  352 KRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 439          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.466e-27
Identity = 57/88 (64.77%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   13 KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVS+  D ++L+++Q RF+V I E PE+ ID STY+
Sbjct:  350 KRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 437          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.474e-26
Identity = 54/88 (61.36%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   10 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTY 270
            NKRI VATD+ GRGID+ ++N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVS+ +D ++L  V+ RFEV + E PE  +D++ Y
Sbjct:  353 NKRICVATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAY 440          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.149e-26
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query:   16 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 273
            RI V+TD+ GRGID+ER+N+ INYDMPD AD YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RF  +I E PE  I +++YM
Sbjct:  350 RICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYM 436          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20
Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  316 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20
Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  316 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.656e-20
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L ++++ +   I+ELP  +D + Y+
Sbjct:  317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIEELP--VDFAAYL 402          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 9.999e-20
Identity = 43/89 (48.31%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G+ R+LV TDLV RGID+  VNIVIN+D+P + ++YLHR+GR GR+G KG+AI FV+   D ++L ++++ +   I ELP  +D + Y+
Sbjct:  317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIDELP--VDFAAYL 402          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
SUB2_YARLI3.791e-2765.56ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
SUB22_VANPO3.791e-2765.91ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]
SUB21_VANPO3.791e-2765.91ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
SUB2_CANGA6.466e-2764.77ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB2_SCLS15.474e-2661.36ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_PHANO7.149e-2662.07ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
IF4A_LEIMA5.862e-2049.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN5.862e-2049.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_TRYBB7.656e-2048.31Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_TRYCR9.999e-2048.31Probable eukaryotic initiation factor 4A OS=Trypan... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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