CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 273
            G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++  +   I ELP  +D + Y+
Sbjct:  316 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEGHYHTQIDELP--VDFAAYL 401          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 38/80 (47.50%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 246
            G+ R+L+ TDL+ RGID+++V++VINYD+P S + Y+HR+GR GRFG KG+AI FVS+  D ++L +++  +   ++E+P
Sbjct:  316 GSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSN-EDKNMLEEIETYYNTQVEEMP 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 41/83 (49.40%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG++I FV+S  D  +L+ +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTS-DDERMLSDIQRFYNVVIEELPANV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 38/83 (45.78%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TD++ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+  +D+  L ++++ +   I+E+PE I
Sbjct:  317 GSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTE-NDARQLKEIESYYTTQIEEMPESI 398          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 41/83 (49.40%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV+   D  +L+ +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTK-DDERMLSDIQKFYNVVIEELPANV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.444e-18
Identity = 41/83 (49.40%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV++  D  +L  +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTT-DDERMLFDIQKFYNVIIEELPSNV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV +  D  I+  VQ  + V ++ELP  +
Sbjct:  325 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERIVFDVQRFYNVTVEELPANV 406          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV    D  +L+ +Q  + V I+ELP  +
Sbjct:  328 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIK-DDERMLSDIQRFYNVVIEELPANV 409          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.886e-18
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV +  D  +L  +Q  + V I+ELP  +
Sbjct:  329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQRFYNVTIEELPANV 410          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.463e-18
Identity = 39/83 (46.99%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ RIL+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  311 GSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTE-RDVGMMREIEQFYSTQIEEMPADI 392          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
IF4A_LEIBR1.706e-1948.31Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_CRYNE3.800e-1947.50ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A9_TOBAC6.481e-1949.40Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A_CAEEL8.465e-1945.78Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF410_TOBAC8.465e-1949.40Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF4A8_TOBAC1.444e-1849.40Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A_MAIZE1.886e-1849.40Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A7_TOBAC1.886e-1849.40Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF4A3_ORYSJ1.886e-1849.40Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A_PICST2.463e-1846.99ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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