CX309046

Overview
NameCX309046
Unique NameCX309046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 38/83 (45.78%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  313 GSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            G+ R+L+ TDL+ RGID+++V++VINYD+P   + YLHR+GR+GRFG KG+AI FV +  D  +L  +Q  + V I+ELP  +
Sbjct:  329 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQRFYNVVIEELPANV 410          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  314 GNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 395          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  315 GNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.217e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  313 GNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  313 GNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  313 GNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 GGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GG  R+L+ TD+  RGID+++V++VINYD+P S + YLHR+GR+GRFG KG+AI FV +  D  IL  ++  +   I E+P  +
Sbjct:  310 GGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFV-TVDDVRILRDIEQYYSTQIDEMPMNV 392          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  313 GNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX309046 vs. ExPASy Swiss-Prot
Match: FAL1_ASPOR (ATP-dependent RNA helicase fal1 OS=Aspergillus oryzae GN=fal1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.201e-18
Identity = 39/83 (46.99%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    7 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 255
            GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  312 GNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 393          
The following BLAST results are available for this feature:
BLAST of CX309046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
IF4A_ASPCL3.217e-1845.78ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A1_ORYSJ3.217e-1849.40Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
FAL1_NEUCR3.217e-1846.99ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_MAGGR3.217e-1846.99ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_COCIM3.217e-1846.99ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
FAL1_NEOFI4.201e-1846.99ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_EMENI4.201e-1846.99ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_CRYNE4.201e-1847.62ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]
FAL1_ASPTN4.201e-1846.99ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
FAL1_ASPOR4.201e-1846.99ATP-dependent RNA helicase fal1 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionC21007G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21007G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309046 ID=CX309046; Name=CX309046; organism=Citrus clementina; type=EST; length=485bp
GCGGGGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGGTAGGGG
AATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGCCAGATT
CTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTTGGCACC
AAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTCCGATATTCT
CAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTCCTGAGC
AGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTTCTCTGA
TGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCCCTTTAT
GTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTTGCCTTG
GAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGCCTTTTC
TTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCT
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