CX309064

Overview
NameCX309064
Unique NameCX309064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E1_DROME (Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  117 FWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXMNYYACLSMMSLLILTP 503
            +++ + P+A+   +  V + +S+ KV VS+ H +K+  P F+V+++R  FGE  P  VY+SLLPII G  +A VTE++F+M+G + A+IS + F  +NIF            +     L  +SL I  P
Sbjct:   77 YYRLIVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSLFIFLP 205          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E1_HUMAN (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.359e-14
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  204 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 491
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F+M G + A+ + L F  +NIF
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIF 207          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E2_MOUSE (Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  204 VAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 455
            V   VS+  VAVSF   +KS  P F+V++SR + GE   L V +SL+P++GG AL   TE++FN++GF  A+ +N+    +N+F
Sbjct:  158 VLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVF 241          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E2_HUMAN (Solute carrier family 35 member E2 OS=Homo sapiens GN=SLC35E2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  204 VAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 455
            V   VS+  VAVSF   +KS  P F+V++SR + GE   L V +SL+P++GG AL   TE++FN++GF  A+ +N+    +N+F
Sbjct:  158 VLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVF 241          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E1_RAT (Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  204 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 491
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F++ G + A+ + L F  +NIF
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIF 207          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: S35E1_MOUSE (Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.656e-13
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  204 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 491
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F++ G + A+ + L F  +NIF
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIF 207          
BLAST of CX309064 vs. ExPASy Swiss-Prot
Match: YG1B_SCHPO (Putative transporter C83.11 OS=Schizosaccharomyces pombe GN=SPBC83.11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = -2
Query:  204 PVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPLPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF 485
            P+++    GHV  +++ +K+ VS  H +K+  P F+VL  RF+F        Y SL+P+  G  LA   EL+ +++G + A+IS   FV +NIF
Sbjct:   75 PLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGLLYALISTCIFVSQNIF 168          
The following BLAST results are available for this feature:
BLAST of CX309064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
S35E1_DROME2.233e-1835.66Solute carrier family 35 member E1 homolog OS=Dros... [more]
S35E1_HUMAN4.359e-1442.71Solute carrier family 35 member E1 OS=Homo sapiens... [more]
S35E2_MOUSE5.693e-1442.86Solute carrier family 35 member E2 OS=Mus musculus... [more]
S35E2_HUMAN5.693e-1442.86Solute carrier family 35 member E2 OS=Homo sapiens... [more]
S35E1_RAT1.656e-1341.67Solute carrier family 35 member E1 OS=Rattus norve... [more]
S35E1_MOUSE1.656e-1341.67Solute carrier family 35 member E1 OS=Mus musculus... [more]
YG1B_SCHPO3.454e-1136.17Putative transporter C83.11 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC21008A09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309064 ID=CX309064; Name=CX309064; organism=Citrus clementina; type=EST; length=585bp
AAGTGATAGAAGATACTCTGTGCCGCTACCCACCACACAAAGTTGGGACC
AATTTGAGCAATAGCCTTTTGCCAGCCAGCAGCCCACATCTGAGGGCCCT
CCACAGCAATTGCAAATGGTGTGAGAATCAAAAGAGACATCATAGACAAA
CAAGCATAATAGTTCATCCCACCAACAGACTTTCCCTTCATCCCTTTCTT
GGAGAAAATGTTCCGAAACACGAATGCCAAATTCGATATCATAGCTCCCA
TAAATCCAATCATGTTGAAGTTGAGCTCTGTAACAGCAGCAAGGGCACAG
CCTCCAATAATCGGCAGGAGTGACATATAAACCGGCAAGGGAAGTGTCTC
ACCGAACAAGAACCTTGAAACCAATACACTGAATGCAGGCTCACCACTCT
TGATGATGTGGGTGAATGAAACTGCAACTTTTGACATACTTACGGTTGCT
GCTACATGCCCAATTGTATGTGCCACTGCAACAGGAAACAAACTCTTCCA
GAACTCAAGATCGGTTTTAGGGGCTTCAGCGATTCTGGTGGCCCAAGAAA
CCAACATCATGAGAGAGCCACAAGCCAGTGAAAGA
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