CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.025e-15
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ FT+  S LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 37/54 (68.52%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  ++LF SLFG +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  LF  LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
[Close]
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 2 
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+ F +LFS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF1_CHLRE1.025e-1570.37ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SCHPO1.339e-1568.52ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_RAT1.749e-1570.37ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.749e-1570.37ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.749e-1570.37ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_LOCMI1.749e-1570.37ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_HUMAN1.749e-1570.37ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_DROME1.749e-1570.37ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF1_BOVIN1.749e-1570.37ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF1_ARATH1.749e-1570.37ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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