CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  + +FS +FG K+ RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG +F  L  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVE
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFO (ADP-ribosylation factor 1 OS=Plasmodium falciparum (isolate NF54) GN=ARF1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  +RLF+ LF  K+ RIL++GLD AGKTTILY++++GEVV+TIPTIGFNVE
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF1_PLAFA (ADP-ribosylation factor 1 OS=Plasmodium falciparum GN=ARF1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.526e-14
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG+  +RLF+ LF  K+ RIL++GLD AGKTTILY++++GEVV+TIPTIGFNVE
Sbjct:    1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.298e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2
Query:  239 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            F  LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE 53          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARF5_CHICK1.481e-1464.81ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF3_TAKRU2.526e-1468.52ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT2.526e-1468.52ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB2.526e-1468.52ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE2.526e-1468.52ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN2.526e-1468.52ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN2.526e-1468.52ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF1_PLAFO2.526e-1466.67ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARF1_PLAFA2.526e-1466.67ADP-ribosylation factor 1 OS=Plasmodium falciparum... [more]
ARL1_CAEEL3.298e-1480.43ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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