CX309065

Overview
NameCX309065
Unique NameCX309065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MGI  +  FSS+F +K  ++L+LGLD +GKTTILY+L + EVVSTI T+G+NVE
Sbjct:    1 MGISSSNPFSSIFKSKAIKLLMLGLDGSGKTTILYKLMLNEVVSTISTLGYNVE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG  F+R+        + RIL++GLD +GKTTILY+L++GEVV+T+PTIGFN+E
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLE 54          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG++F +L+S LF N+E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG++F +L+S LF N+E +++++GLDNAGKTTILY+  M EVV T PTIG NVE
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE 53          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  212 NMGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            N+   F  +FS   G +  RIL++GLD AGK+T+LY+L+ G+V+ TIPTIGFNVE
Sbjct:    8 NITSFFVNIFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVE 62          
BLAST of CX309065 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  215 MGIMFTRLFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVE 376
            MG   +++   LFG+KE +IL+LGLD AGKTTILY+L++ ++ ++ PT+GFNVE
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVE 54          
The following BLAST results are available for this feature:
BLAST of CX309065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ARFD_DICDI2.001e-1159.26ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARF4_ARATH2.001e-1155.56Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARL5B_MOUSE2.614e-1161.11ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN2.614e-1161.11ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARFF_DICDI3.413e-1154.55ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARF3_YEAST3.413e-1153.70ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC21008A11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309065 ID=CX309065; Name=CX309065; organism=Citrus clementina; type=EST; length=378bp
GCGGGGAAAACAACAATTAAACAAACCCCCCAAAACTTTCATCTTTTTTA
TTTTTTTATAACTCAAAAGTCTCAACAAATCTCGCAAGCAGACCCTCTTC
CTTTTTTTCCAGGGAGGAACAGGGGACTCTGCTTTGCAGATCCAATACAT
AATTCAATCACAAAAAAAGCTTCAATTTTTCCGATCGGATCACTAAGAAT
ACAAAATCGGAAACATGGGTATTATGTTTACGCGATTGTTCTCTTCGCTC
TTTGGCAACAAAGAGGCTAGGATTCTAGTTCTTGGCCTTGACAATGCTGG
CAAAACTACGATTCTCTATCGGCTTCAAATGGGTGAAGTTGTGTCAACTA
TTCCAACTATTGGATTTAATGTGGAGAC
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