CX309069

Overview
NameCX309069
Unique NameCX309069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_DROWI (Eukaryotic translation initiation factor 3 subunit L OS=Drosophila willistoni GN=GK20774 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.697e-19
Identity = 55/131 (41.98%), Postives = 85/131 (64.89%), Query Frame = -3
Query:    3 KTKQ-YHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREK-YGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +TKQ Y  +S Q +QI K+ EQMY LLAICL L P  + ++E++   LREK Y + M +MQ  D + F  +   F +ACP+F++P  P+ + P+ +Y +D    QL +F+ EV+QQ+ L   RS+LK+Y++
Sbjct:  316 RTKQLYSTRSYQNDQINKQAEQMYHLLAICLVLHP--QCIDESIQQVLREKNYHDAMFKMQCGDLDVFKSF---FIFACPRFVSPCPPAADAPMEDYVKDPMEHQLLVFMDEVRQQKDLPTTRSYLKLYTT 441          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_CRYNE (Eukaryotic translation initiation factor 3 subunit L OS=Cryptococcus neoformans GN=CNL05160 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.269e-18
Identity = 51/135 (37.78%), Postives = 82/135 (60.74%), Query Frame = -3
Query:    3 KTKQYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEP------LVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            + KQYH +S QY  I K  E+MYALLAIC +L P     +E + + ++E YG+++  +QR   EA   + +L+  ACPK++  + P +E+       L N   DA +  L+LFL +V+  Q ++G+R+ LK+Y+S
Sbjct:  345 RMKQYHTRSYQYGSIAKTCERMYALLAICTTLSP--GPSDENIMTIVKEHYGDQLAILQRGGPEALEAFKDLYLQACPKYLNVNPPPYEDASALEAWLANPPADATQRHLELFLSDVQAVQGVNGMRNLLKLYTS 477          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_BRUMA (Eukaryotic translation initiation factor 3 subunit L OS=Brugia malayi GN=Bm1_25770 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.926e-15
Identity = 46/126 (36.51%), Postives = 76/126 (60.32%), Query Frame = -3
Query:    3 QYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 380
            Q  +K+ QY+ I K NEQ+Y LLAICL+L P  + +++++ SQL E+ GE+M  M   + + F +    F   CPKF++P+   +E P  N  ++    Q   FL E++ Q +L  +R +LK+Y++
Sbjct:  332 QQQKKNFQYDVIGKTNEQLYHLLAICLTLQP--QRIDDSIQSQLYERTGERMNHMSNGNIDEFRL---AFQQGCPKFLSPTTVVYEGP--NQAKEPLLRQCNAFLEEIESQIMLPILRGYLKLYTT 450          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_YARLI (Eukaryotic translation initiation factor 3 subunit L OS=Yarrowia lipolytica GN=YALI0D03399g PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.897e-14
Identity = 43/130 (33.08%), Postives = 79/130 (60.77%), Query Frame = -3
Query:    3 YKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 392
            Y  +  + + P+Y+   K++EQMYALLAIC+ L P    ++++++  LR++YG++M  MQR D     +++ELF++A PKFI P      +PL ++        LK+F+ +V      + ++S+L +Y++
Sbjct:  307 YMARTKNVQGPRYDA--KRSEQMYALLAICVVLSP--ARLDDSIHVALRDRYGDQMAAMQRGD---LKLFEELFTFAAPKFIQPGDVHGGDPLKHH--------LKIFMVDVTNTLSTANLKSYLNLYAT 421          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_CAEBR (Eukaryotic translation initiation factor 3 subunit L OS=Caenorhabditis briggsae GN=eif-3.L PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 43/129 (33.33%), Postives = 79/129 (61.24%), Query Frame = -3
Query:    3 KTKQYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            +++Q  +K+ QY+ I K  +Q++ LLAICL++ P  + ++E++ SQL E+ GE+M+ M   + + F      FS  CPKF++P+   +E   VN +++    Q + FL  ++ Q  L  +R +LK+Y++
Sbjct:  316 QSQQPSKKNFQYDVIGKTWDQLFYLLAICLAVQP--QRIDESIASQLAERCGERMMHMANGNVDEFR---NAFSTGCPKFLSPTTVVYEG--VNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTT 437          
BLAST of CX309069 vs. ExPASy Swiss-Prot
Match: EIF3L_CAEEL (Eukaryotic translation initiation factor 3 subunit L OS=Caenorhabditis elegans GN=eif-3.L PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 42/129 (32.56%), Postives = 78/129 (60.47%), Query Frame = -3
Query:    3 KTKQYHQKSPQYEQILKKNEQMYALLAICLSLCP*VKHVEETVNSQLREKYGEKMIRMQRYDDEAFSIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEVKQQQLLSGVRSFLKVYSS 389
            + +Q  +K+ QY+ I K  +Q++ LLAICL++ P  + ++E++ SQL E+ GE+M+ M   + + F      F+  CPKF++P+   +E   VN +++    Q + FL  ++ Q  L  +R +LK+Y++
Sbjct:  318 QNQQPSKKNFQYDVIGKTWDQLFHLLAICLAIQP--QRIDESIASQLSERCGERMMHMANGNIDEFR---NAFATGCPKFLSPTTVVYEG--VNQSKEPLLRQTQSFLEGIESQMALPVLRGYLKLYTT 439          
The following BLAST results are available for this feature:
BLAST of CX309069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
EIF3L_DROWI5.697e-1941.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CRYNE1.269e-1837.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BRUMA2.926e-1536.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_YARLI1.897e-1433.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CAEBR6.101e-1333.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CAEEL1.359e-1232.56Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC21008B05Rv AbsLeaSub1 Citrus clementina cDNA clone C21008B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309069 ID=CX309069; Name=CX309069; organism=Citrus clementina; type=EST; length=394bp
AGTGATGAATACACTTTCAAGAAAGATCGGACTCCTGATAATAATTGTTG
CTGCTTCACCTCATAAAGGAAAAGCTTCAACTGGAGTCTATAGGCATCCT
GGTTGTAATTTACAAGAGGCTCCTCAAAGCTCGGAGCAGAGGGAGTAATG
AACTTAGGACATGCATACGAGAAGAGCTCATCATAGATAGAAAATGCTTC
ATCATCATATCTTTGCATCCGAATCATCTTCTCCCCATATTTCTCCCGTA
GTTGCGAGTTCACAGTCTCCTCAACATGCTTCACTTAGGGACAAAGAGAA
AGACAAATTGCCAGCAAGGCATACATCTGCTCATTCTTCTTTAGTATCTG
CTCATACTGTGGAGATTTCTGATGGTATTGCTTGGTCTTGTATA
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