CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICAH (Serine hydroxymethyltransferase OS=Rickettsia akari (strain Hartford) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 86/206 (41.75%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+   SGGHL+HG         + +  +F +  Y VN +T  IDY+++E  A+ ++PK+LI G S+YPR  D+ RFR+IADK GA  M D+AHI+GL+A  E  SP  Y  +VTSTTHK+L             + PR  G+ L+  +     +  ++IN A+ P LQGGP  + +AA A+A  +   P
Sbjct:  101 ANQAVYLTLLQPGDTILGMSLDSGGHLTHG------ASPNMSGKWFNAVSYGVNKKTYLIDYDEIERLAVLHKPKLLIAGFSAYPRNIDFTRFREIADKVGAYFMADIAHIAGLVATGEHQSPISYAHVVTSTTHKTL-------------RGPR-GGLVLSDDE-----EIGKKINSALFPGLQGGPLMHIVAAKAVAFLESLQP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELPH (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain HPAG1) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y VN   GYIDYE+  + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+   E A PF +C +V+STTHK+L             + PR  G+ L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGLILTNDE-----EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 83/206 (40.29%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL PGD ++G+D   GGHL+HG        VS +   F    Y V  +TG IDY++L   A +++PK+++ G S+YPR  D+    +IA + GA LM DMAHI+GL+AA E  SP  Y D+VT+TTHK+L             + PR        G   SN  F ++++  + P +QGGP  + IAA A+A K+  TP
Sbjct:   99 ANMGVYFALLEPGDTVLGMDLSHGGHLTHG------SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTL-------------RGPR-------GGMILSNKGFGKKLSSQIFPGIQGGPLMHVIAAKAVAFKEALTP 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJJ (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 85/201 (42.29%), Postives = 118/201 (58.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALK 604
            AN  VY  L+ PGD+I+G+D   GGHL+HG       KVS++   +ES  Y V    G IDYEK+ E A   +PK+++CG S+Y R  D+ +FR+IAD+ GA L  D+AHI+GL+ A E  SPF Y  +V+STTHK+L             + PR   I  N      + +F ++IN A+ P +QGGP  + IAA A+  K
Sbjct:   96 ANQGVYAALINPGDKILGMDLSHGGHLTHG------AKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTL-------------RGPRGGIIMTN------DEEFAKKINSAIFPGIQGGPLMHVIAAKAVGFK 270          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BEII9 (Serine hydroxymethyltransferase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 85/206 (41.26%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD  MGLD  +GGHL+HG        V+ +  +F++  Y V      ID + +E  A +++PK++I GGS+YPR WD+ RFR IAD  GA    DMAH +GL+A     SPF +  +VTSTTHK+L             + PR  G+ L      ++ D  ++IN AV P LQGGP  + IAA A+A  +   P
Sbjct:  113 ANQAVFLALLQPGDVFMGLDLAAGGHLTHG------SPVNLSGKWFKAVSYGVRQSDHLIDMDAVEALAKEHKPKLIIAGGSAYPRHWDFARFRAIADSVGAYFFVDMAHFAGLVAGGAHPSPFPHAHVVTSTTHKTL-------------RGPR-GGLVLT-----NDADIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALRP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 83/206 (40.29%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD+IMG+D   GGHL+HG        V+ +  +F+   Y V+ QT  +DY+++ E A+  RPK+LICG S+YPR  D+ +FR IAD+ GA L+ D+AHI+GL+A     +P  YCD+VT+TTHK+L             + PR  G+ L       + +  ++++ +V P  QGGP  + IA  A+A  +   P
Sbjct:  102 ANFAVFLTLLKPGDKIMGMDLSHGGHLTHG------SPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVATGLHPNPLPYCDVVTTTTHKTL-------------RGPR-GGLILTR-----DAELGKKLDKSVFPGTQGGPLEHVIAGKAVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A+Y  LL PGD +MG+  P GGHL+HG+       VSA  I+F S  Y V   TG ID++++ E A   RPK++  GG++ PR  D+  F +IA +  AVL+ D+AHISGL+A     SP  + DI+++TTHK+L             + PR   +        S   + + ++ AV P LQGGPHN+  AA+A+AL +   P
Sbjct:  104 ANLAIYLALLSPGDTVMGMALPMGGHLTHGW------PVSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFAGGTAIPRIIDFAAFAEIAREVNAVLVADIAHISGLVAGGVHPSPVGHADIISTTTHKTL-------------RGPRGAML-------MSTEQYAKALDKAVFPGLQGGPHNHTTAAIAVALLEAMQP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEPK (Serine hydroxymethyltransferase 1 OS=Pseudomonas putida (strain KT2440) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34
Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL  GD I+G+    GGHL+HG       KVS++   + +  Y ++  TG IDY+++E  A++++PK+++ G S+Y +  D+ RFR IADK GA+L  DMAH++GL+AA    +P  + D+VT+TTHK+L             + PR  G+ L      SN + E+++N AV P  QGGP  + IAA A+  K+   P
Sbjct:  101 ANGAVYLALLQAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGIDTNTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTL-------------RGPR-GGLIL----AKSNEEIEKKLNAAVFPGAQGGPLMHVIAAKAVCFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RHOCS (Serine hydroxymethyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD  MG+D  +GGHL+HG         + +  +F+   Y V      IDYE++E KA ++RPK++I GGS+YPR+ D+ RFR+IAD+ GA LM DMAH +GL+AA    SP  +  +VT+TTHK+L             + PR   I  N      + +  ++ N AV P LQGGP  + IAA A+A  +   P
Sbjct:  107 ANQAVFMALLQPGDTFMGMDLAAGGHLTHG------APANQSGKWFKVVSYGVRRDDHLIDYEEVEAKAREHRPKLIIAGGSAYPRQIDFARFRRIADEIGAYLMVDMAHYAGLVAAGVYPSPLPHAHVVTTTTHKTL-------------RGPRGGMILSN------DPELGKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALRP 287          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELPD (Serine hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY   L PGD I+G++   GGHL+HG        V+ +  FF   PY V+P+T  IDY ++E  A++++PK+++ G S+YPR  D+  FR IADK GA++M DMAHI+GL+AA    SP  + + VT+TTHK+L             + PR        G       F + IN  + P +QGGP  + IAA A+A K+   P
Sbjct:   97 ANMAVYFSALKPGDTILGMNLSHGGHLTHG------SPVNFSGRFFNVVPYGVSPETQTIDYAEVERLALEHKPKMIVVGASAYPRTIDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPIPHAEFVTTTTHKTL-------------RGPR-------GGMILCQERFAKSINSQIFPGIQGGPLMHVIAAKAVAFKEALQP 276          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RICAH1.920e-3441.75Serine hydroxymethyltransferase OS=Rickettsia akar... [more]
GLYA_HELPH1.920e-3441.26Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_DESAA1.920e-3440.29Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_CAMJJ1.920e-3442.29Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_BEII91.920e-3441.26Serine hydroxymethyltransferase OS=Beijerinckia in... [more]
GLYA_ANASP1.920e-3440.29Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA_ACIC11.920e-3439.81Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA1_PSEPK1.920e-3439.81Serine hydroxymethyltransferase 1 OS=Pseudomonas p... [more]
GLYA_RHOCS2.507e-3441.26Serine hydroxymethyltransferase OS=Rhodospirillum ... [more]
GLYA_PELPD2.507e-3440.29Serine hydroxymethyltransferase OS=Pelobacter prop... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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