CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCH7 (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain 7448) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD+I+GLD  +GGHLSHGY      K++ + +F+    Y ++ +   +DYE +E+ A+  +P ++ICG S+Y R+ D+ RFRQIADK  A L+ D+AHI+GLIAA +  SP  Y  I+TSTT K+L             + PR  G+ L      S+ +   +I+  V P +QGGP  + IAA A+A K+   P
Sbjct:   98 ANAAVFAALLKPGDKILGLDLNAGGHLSHGY------KINFSGMFYSGISYFLD-ENELLDYEAIEKIALKTKPNLIICGYSAYSRKIDFARFRQIADKVNAFLLADIAHIAGLIAAGQHPSPVGYAHIITSTTQKTL-------------RGPR-GGLILT-----SSKEIAAKIDKVVFPGIQGGPFFHTIAAKAVAFKEALEP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCAP (Serine hydroxymethyltransferase OS=Mycoplasma agalactiae (strain PG2) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 87/206 (42.23%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A    L   GD+IMGLD  SGGHL+HGY      K+S + IF+ S  Y VN + G +DYE ++E A+  +PK++ICG S+Y R  D+ +FR+IAD CGA LM D+AHI+GLIA     SP  Y DI+TSTTHK+L             +  R   I  N      + +  +++N  V P  QGGP  + IA  A+A  +   P
Sbjct:   98 ANAAALATLASQGDKIMGLDLASGGHLTHGY------KISFSGIFYNSITYSVN-EDGILDYEAIKELAIKEKPKVIICGYSAYSRIVDFKKFREIADACGAKLMADIAHIAGLIAGGVHPSPVPYADIITSTTHKTL-------------RGARGAIIMTN------DVEIAKKMNRWVFPGYQGGPLFHAIAGKAVAFGEALKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACLM (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+ PGD ++G+D  +GGHL+HG        V+ +   +   PY VNPQT  +DYE++ + A + +PK+++ G S+Y R  D+ +FRQIAD  GA LM DMAHI+GL+A     +P  Y D+VT+TTHK+L             + PR   I  N      +    ++IN A+ P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIQPGDTVLGMDLNAGGHLTHG------ASVNFSGKTYHFVPYGVNPQTELLDYEEILKIAKEVQPKLIVAGASAYSRLIDFAKFRQIADSVGAKLMVDMAHIAGLVATGAHPNPLPYADVVTTTTHKTL-------------RGPRGGMILTN------DEVLAKKINSAIFPGTQGGPLEHVIAAKAVAFKEALDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_FINM2 (Serine hydroxymethyltransferase OS=Finegoldia magna (strain ATCC 29328) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G+    GGHL+HG        V+ +  F+    Y V+P+TG IDYE + E A+ ++PK+++ G S+YPR  D+ +FR+IAD+ GA LM DMAHI+GL+A  +  SP  Y D VT+TTHK+L             + PR   I           + ++ ++ +V P  QGGP  + IAA A+  K+   P
Sbjct:  101 ANIAVYVAVLKPGDTVLGMRLTEGGHLTHG------SPVNMSGKFYNFVDYGVDPETGTIDYENVRELALKHKPKLIVAGASAYPRIIDFKKFREIADEVGAYLMVDMAHIAGLVATGDHPSPVPYADFVTTTTHKTL-------------RGPRGGAI-------LCKEEHKKLLDKSVFPGFQGGPLEHIIAAKAVCFKEDLQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_EHRRW (Serine hydroxymethyltransferase OS=Ehrlichia ruminantium (strain Welgevonden) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 83/209 (39.71%), Postives = 118/209 (56.46%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASI---FFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+  LL PGD ++G+    GGHL+HG         SA SI   +F +  Y+V+  TG ID + +E+ A+ + P ++I G SSYPR  D+ RFR+IADK GA L+ D+AH +GL+AA E  SP +Y  ++TSTTHK+L             + PR   I  NH       D  ++I  ++ P +QGGP  + IAA A+A  +   P
Sbjct:  103 ANQGVFAALLKPGDTVIGMSLDCGGHLTHG---------SAPSISGKWFNAVQYQVDRDTGMIDMDAIEKLALSHNPSLIIAGSSSYPRTIDFKRFREIADKVGAYLLADIAHYAGLVAAGEFPSPIEYAHVITSTTHKTL-------------RGPRGAVIMTNH------EDIYKKIQSSIFPGMQGGPLMHVIAARAVAFGEALKP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_EHRRG (Serine hydroxymethyltransferase OS=Ehrlichia ruminantium (strain Gardel) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.507e-34
Identity = 83/209 (39.71%), Postives = 118/209 (56.46%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASI---FFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+  LL PGD ++G+    GGHL+HG         SA SI   +F +  Y+V+  TG ID + +E+ A+ + P ++I G SSYPR  D+ RFR+IADK GA L+ D+AH +GL+AA E  SP +Y  ++TSTTHK+L             + PR   I  NH       D  ++I  ++ P +QGGP  + IAA A+A  +   P
Sbjct:  103 ANQGVFAALLKPGDTVIGMSLDCGGHLTHG---------SAPSISGKWFNAVQYQVDRDTGMIDMDAIEKLALSHNPSLIIAGSSSYPRTIDFKRFREIADKVGAYLLADIAHYAGLVAAGEFPSPIEYAHVITSTTHKTL-------------RGPRGAVIMTNH------EDIYKKIQSSIFPGMQGGPLMHVIAARAVAFGEALKP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y V    GYI+Y+K+EE A   +P++++CG S+Y RE D+ RFR+IAD  GA+L+ D+AH++GLI A E  +PF +C IVT+TTHK+L             + PR   I  N      + +  ++I+ AV P +QGGP  + IAA A+   +   P
Sbjct:   98 ANVAVYNALLKPYDKILGMDLSHGGHLTHG------AKVSVTGQTYQSFFYGVELD-GYINYDKVEEIAKIVKPQMIVCGFSAYARELDFKRFREIADSVGALLLGDVAHVAGLIVAGEYPNPFPHCHIVTTTTHKTL-------------RGPRGGMILTN------DEEIAKKIDKAVFPGMQGGPLMHVIAAKAVGFGENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_VESOH (Serine hydroxymethyltransferase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 88/202 (43.56%), Postives = 120/202 (59.41%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN AV+  LL+PGD I+G+    GGHL+HG  TP     S +   F S  Y +N +TG IDYE++E  A  Y+PK++I G S+Y R  D+ RFR+IAD  GA LM DMAH++GLIA  E  SP    D+ T+TTHK+L             + PR  G+ L      SN   E+++N A+ P +QGGP  + IAA A++ K+
Sbjct:  101 ANAAVFQALLVPGDTILGMSLAHGGHLTHGA-TP-----SFSGKNFNSIQYGLNQKTGEIDYEQVEVLAKRYKPKMIIAGFSAYSRMVDWQRFREIADSVGAYLMVDMAHVAGLIATGEYPSPVAIADVTTTTTHKTL-------------RGPR-GGLIL----AKSNKTIEKKLNAAIFPGIQGGPLMHIIAAKAVSFKE 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THEEB (Serine hydroxymethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F    Y V+P+T  +D +++ + A  +RPK++ICG S+YPR   +  FRQIAD+ GA LM D+AHI+GL+A+    +P   CD+VT+TTHK+L             + PR  G+ L   +     D  ++++ AV P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANFAVFLALLNPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFNVVHYGVHPETERLDMDQVRDLARQHRPKLIICGYSAYPRVIPFAEFRQIADEVGAYLMADIAHIAGLVASGYHPNPVPLCDVVTTTTHKTL-------------RGPR-GGLILTRDE-----DLGKKLDKAVFPGTQGGPLEHVIAAKAVAFGEALKP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 82/206 (39.81%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F    Y V+PQT  ID++++ + A+ +RPK++ICG S+YPR  D+  FR IAD+ GA L+ D+AHI+GL+A     +P   CD+VT+TTHK+L             + PR  G+ L       + +  ++++ AV P  QGGP  + IA  A+A  +   P
Sbjct:   97 ANFAVFLALLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFRVVHYGVHPQTERIDFDQVRDLALQHRPKLIICGYSAYPRAIDFAAFRTIADEVGAYLLADIAHIAGLVATGHHPNPVPLCDVVTTTTHKTL-------------RGPR-GGLILTR-----DPELGKKLDKAVFPGSQGGPLEHVIAGKAVAFGEALQP 277          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MYCH72.507e-3441.26Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_MYCAP2.507e-3442.23Serine hydroxymethyltransferase OS=Mycoplasma agal... [more]
GLYA_LACLM2.507e-3439.81Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_FINM22.507e-3438.83Serine hydroxymethyltransferase OS=Finegoldia magn... [more]
GLYA_EHRRW2.507e-3439.71Serine hydroxymethyltransferase OS=Ehrlichia rumin... [more]
GLYA_EHRRG2.507e-3439.71Serine hydroxymethyltransferase OS=Ehrlichia rumin... [more]
GLYA_WOLSU3.275e-3441.75Serine hydroxymethyltransferase OS=Wolinella succi... [more]
GLYA_VESOH3.275e-3443.56Serine hydroxymethyltransferase OS=Vesicomyosocius... [more]
GLYA_THEEB3.275e-3440.29Serine hydroxymethyltransferase OS=Thermosynechoco... [more]
GLYA_SYNJB3.275e-3439.81Serine hydroxymethyltransferase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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