CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROMA (Serine hydroxymethyltransferase OS=Prochlorococcus marinus GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F +  Y V+  T  +++E++ + A+  RPK++ICG S+YPR  D+  FR IAD+  A L+ D+AHI+GL+A     +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F +R + AV P  QGGP  + IAA A+A  +   P
Sbjct:  101 ANFAVFLALLNPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFNAIHYGVDQTTKVLNFEQIRQVALKNRPKLIICGFSAYPRTIDFKAFRSIADEIDAYLLADIAHIAGLVACGAHPNPVPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDKEFGKRFDKAVFPGNQGGPLEHVIAAKAVAFGEALKP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 82/206 (39.81%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G++   GGHL+HG        V+ +   F   PY V+ +T  IDYE+ E  A++++PK+++ G S+YPR  D+  FR+IADK GAV+M DMAHI+GL+AA    SP  Y + VT+TTHK+L             + PR   I           ++ + +N  + P +QGGP  + IAA A+A K+  TP
Sbjct:   97 ANMAVYFSVLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTL-------------RGPRGGMIMCRE-------EWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 82/206 (39.81%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD I+G++   GGHL+HG        V+ +  FF   PY V+ +T  ID+ ++E  A++++PK+++ G S+YPR  D+  FR IADK GAV+M DMAHI+GL+AA    SP  Y + VT+TTHK+L             + PR        G      ++ + +N  + P +QGGP  + IAA A+ALK+   P
Sbjct:   97 ANMAVYFSVLKPGDTILGMNLSHGGHLTHG------SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTL-------------RGPR-------GGMILCREEYAKTLNSNIFPGIQGGPLMHVIAAKAVALKEALQP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_EHRCR (Serine hydroxymethyltransferase OS=Ehrlichia chaffeensis (strain Arkansas) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 83/209 (39.71%), Postives = 120/209 (57.42%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASI---FFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+  LL PGD ++G+    GGHL+HG         SA SI   +F +  Y+V+  TG ID +++E+ A+++ P ++I G SSYPR  D+ RFR+IADK GA L+ D+AH +GLIAA E  SP +Y  ++TSTTHK+L             + PR   I  N+       D  ++I  ++ P +QGGP  + IAA A+A  +   P
Sbjct:  103 ANQGVFAALLKPGDTVIGMSLDCGGHLTHG---------SAPSISGKWFNAVQYQVDRDTGLIDMDEIEKLAVEHNPSLIIAGSSSYPRVIDFKRFREIADKVGAYLLADIAHYAGLIAAGEFPSPVEYAHVITSTTHKTL-------------RGPRGAVIMTNY------EDIHKKIQSSIFPGMQGGPLMHVIAAKAVAFAEALKP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_AGRT5 (Serine hydroxymethyltransferase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 84/206 (40.78%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGDRIMGL    GGHL+HG        V+ +  +F+   Y+V+P+T  ID EK+ EKA++ +PK+++ G S+YPR+ D+  FR+IAD+ GA LM DMAH +GLIA     +   +  + TSTTHK+L             + PR   I  N      + D  +++N AV P  QGGP  + IAA A+A  +   P
Sbjct:  101 ANQAVFLALLQPGDRIMGLSLAHGGHLTHG------SPVTMSGKWFDVVSYEVDPETHLIDMEKVREKALETKPKLIVAGASAYPRQIDFAGFREIADEVGAYLMVDMAHYAGLIAGGHYPNAVPHAHVTTSTTHKTL-------------RGPRGGVILTN------DADLAKKLNSAVFPGNQGGPLMHVIAAKAVAFGEALRP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_WOLPP (Serine hydroxymethyltransferase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 84/206 (40.78%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+GL    GGHL+HG         + +  +F+S  Y VN  T  +D +++E  A++++PK++I G S+YPR+ D+ RFR+IA+K GA L+ D+AH SGLIAA    SP +Y  I+TSTTHK+L             + PR  G+ + + +        ++I  AV P LQGGP  + IAA A+A K+   P
Sbjct:  108 ANQAVFASLLTPGDTILGLSLNCGGHLTHG------AAPNLSGKWFKSIQYTVNRDTYLLDMDEVERLALEHKPKLIIAGASAYPRKIDFERFREIANKVGAYLLADIAHYSGLIAAGCYPSPAEYAHIITSTTHKTL-------------RGPR-GGVVMTNDEA-----LHKKIQSAVFPGLQGGPLMHVIAAKAVAFKEALAP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN A Y  LL PGD ++G+D   GGHL+HG       KV+ +   +    Y V   TGYIDY+++E+ A  ++PK+++ G S+YPR  D+ +FR+IADK GA LM DMAHI+GL+AA    +P  Y D+VT+TTHK+L             + PR   I           +  + I+ A+ P  QGGP  + IAA A+  K+
Sbjct:   99 ANMAAYFALLKPGDTVLGMDLAHGGHLTHG------SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-------------RGPRGGAI-------LCKQEHAKAIDKALFPGTQGGPLMHIIAAKAVCFKE 274          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICFE (Serine hydroxymethyltransferase OS=Rickettsia felis GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+   SGGHL+HG         + +  +F +  Y VN +T  IDY+++E  A  ++PK+LI G S+YPR  D+ RFR+IADK GA  M D+AHI+GL+A  E  SP  Y   VTSTTHK+L             + PR  G+ L++ +     +  ++IN A+ P LQGGP  + IAA A+A  +   P
Sbjct:  101 ANQAVYLALLQPGDTILGMSLDSGGHLTHG------AAPNMSGKWFNAVSYSVNKETYLIDYDEIERLADLHKPKLLIAGFSAYPRNIDFARFREIADKVGAYFMADIAHIAGLVATGEHQSPIPYTHAVTSTTHKTL-------------RGPR-GGLILSNDE-----EIGKKINSALFPGLQGGPLMHIIAAKAVAFLENLQP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 86/212 (40.57%), Postives = 116/212 (54.72%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV    L  GD  MGL+   GGHLSHG        V+++ I +    Y ++ +TG +DY+ +E+ A++++PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I                ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANMAVLLACLEAGDTFMGLNLEHGGHLSHG------SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGKDFDNPWGKKTPKGEIK----------KMSALLDSAVFPGVQGGPLEHVIAAKAVAFGEALDP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PORG3 (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 86/212 (40.57%), Postives = 116/212 (54.72%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV    L  GD  MGL+   GGHLSHG        V+++ I +    Y ++ +TG +DY+ +E+ A++++PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I                ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANMAVLLACLEAGDTFMGLNLEHGGHLSHG------SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGKDFDNPWGKKTPKGEIK----------KMSALLDSAVFPGVQGGPLEHVIAAKAVAFGEALDP 288          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROMA3.275e-3440.29Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_GEOSM3.275e-3439.81Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_GEOSL3.275e-3439.81Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_EHRCR3.275e-3439.71Serine hydroxymethyltransferase OS=Ehrlichia chaff... [more]
GLYA2_AGRT53.275e-3440.78Serine hydroxymethyltransferase 2 OS=Agrobacterium... [more]
GLYA_WOLPP4.277e-3440.78Serine hydroxymethyltransferase OS=Wolbachia pipie... [more]
GLYA_THETN4.277e-3440.10Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_RICFE4.277e-3442.23Serine hydroxymethyltransferase OS=Rickettsia feli... [more]
GLYA_PORGI4.277e-3440.57Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PORG34.277e-3440.57Serine hydroxymethyltransferase OS=Porphyromonas g... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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