CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 81/206 (39.32%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD I+G++   GGHL+HG        V+ +  FF   PY V+ +T  ID+ ++E  A++++PK+++ G S+YPR  D+  FR IADK GA++M DMAHI+GL+AA    SP  Y + VT+TTHK+L             + PR        G      +F + +N  + P +QGGP  + IAA A+A K+   P
Sbjct:   97 ANMAVYFSVLKPGDTILGMNLSHGGHLTHG------SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTL-------------RGPR-------GGMILCREEFAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALAP 276
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.277e-34
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +L PGD IMG++   GGHL+HG        V+ +  +F   PY VN + G+IDY+K+EE A++ +PK++I G S+Y R  D+ RFR+IADK  AVLM DMAHI+GL+AA    SP  Y  + T+TTHK+L             + PR  G+ L   +    Y+F    N A+ P +QGGP  + IAA A+  K+   P
Sbjct:  100 ANMAVQFAILKPGDTIMGMNLDHGGHLTHG------SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAHIAGLVAAGLHPSPIPYAHVTTTTTHKTL-------------RGPR-GGMILCSQEMQDKYNF----NKAIFPGIQGGPLMHVIAAKAVCFKEALQP 280
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XANCP (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG       KV+A+   F +  Y VN Q G IDY++++  A +++PK++I G S+Y ++ D+ RFR IAD  GA L  DMAH++GL+AA    SP D+  +VTSTTHK+L             + PR  GI L  G G    D  +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYLALLQPGDTILGMSLAHGGHLTHG------AKVNASGKLFNAVQYGVNEQ-GLIDYDEVQRLATEHKPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTL-------------RGPR-GGIILAKGAG---EDLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XANCB (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG       KV+A+   F +  Y VN Q G IDY++++  A +++PK++I G S+Y ++ D+ RFR IAD  GA L  DMAH++GL+AA    SP D+  +VTSTTHK+L             + PR  GI L  G G    D  +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYLALLQPGDTILGMSLAHGGHLTHG------AKVNASGKLFNAVQYGVNEQ-GLIDYDEVQRLATEHKPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTL-------------RGPR-GGIILAKGAG---EDLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XANC8 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG       KV+A+   F +  Y VN Q G IDY++++  A +++PK++I G S+Y ++ D+ RFR IAD  GA L  DMAH++GL+AA    SP D+  +VTSTTHK+L             + PR  GI L  G G    D  +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYLALLQPGDTILGMSLAHGGHLTHG------AKVNASGKLFNAVQYGVNEQ-GLIDYDEVQRLATEHKPKMVIAGFSAYSQKIDWARFRAIADSVGAYLFVDMAHVAGLVAAGVYPSPMDHAHVVTSTTHKTL-------------RGPR-GGIILAKGAG---EDLVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJA (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F    Y V+PQT  ID++++ + A  +RPK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A     +P   CD+VT+TTHK+L             + PR  G+ L       + +  ++++ AV P  QGGP  + IA  A+A  +   P
Sbjct:  104 ANFAVFLALLQPGDTIMGMDLAHGGHLTHG------SPVNVSGKWFRVVHYGVDPQTERIDFDQVRDLARQHRPKLIICGYSAYPRIIDFAAFRAIADEVGAYLMADIAHIAGLVATGHHPNPVPICDVVTTTTHKTL-------------RGPR-GGLILTR-----DPELGKKLDKAVFPGSQGGPLEHVIAGKAVAFGEALQP 284
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICCK (Serine hydroxymethyltransferase OS=Rickettsia canadensis (strain McKiel) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 85/206 (41.26%), Postives = 121/206 (58.74%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+   SGGHL+HG         + +  +F +  Y +N +T  IDY ++E  A  ++PK+LI G S+YPR  D+ +FR+IADK GA  M D+AHI+GL+A  E  SP  +  IVTSTTHK+L             + PR  G+ L++ +     +  ++IN A+ P LQGGP  + IAA A+A ++   P
Sbjct:  101 ANQAVYLALLQPGDTILGMSLDSGGHLTHG------AAPNISGKWFNAVSYSLNKETYLIDYNEIERLADLHKPKLLIAGFSAYPRNIDFAKFREIADKVGAYFMADIAHIAGLVATGEHQSPLAFAHIVTSTTHKTL-------------RGPR-GGLILSNDE-----EIGKKINSALFPGLQGGPLMHVIAAKAVAFQEALQP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICBR (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain RML369-C) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  L+ PGD ++G+   SGGHL+HG         + +  +F +  Y V+ +T  IDY+++E  A+ ++PK+LI G S+YPR  D+ +FR+IADK GA LM D+AHI+GL+AA E  SP  +  IVTSTT+K+L             + PR  G+ L++ +     +  ++IN A+ P LQGGP  + IAA A+A  +   P
Sbjct:  101 ANQAVYLALMQPGDTVLGMSLDSGGHLTHG------STANMSGKWFNAVSYSVDKETYLIDYDEVERLAILHKPKLLIAGFSAYPRNLDFAKFREIADKVGAYLMADIAHIAGLVAAGEHQSPIPHAHIVTSTTNKTL-------------RGPR-GGLILSNDE-----EIGKKINSALFPGLQGGPLMHIIAAKAVAFLESLQP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICB8 (Serine hydroxymethyltransferase OS=Rickettsia bellii (strain OSU 85-389) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  L+ PGD ++G+   SGGHL+HG         + +  +F +  Y V+ +T  IDY+++E  A+ ++PK+LI G S+YPR  D+ +FR+IADK GA LM D+AHI+GL+AA E  SP  +  IVTSTT+K+L             + PR  G+ L++ +     +  ++IN A+ P LQGGP  + IAA A+A  +   P
Sbjct:  101 ANQAVYLALMQPGDTVLGMSLDSGGHLTHG------STANMSGKWFNAVSYSVDKETYLIDYDEVERLAILHKPKLLIAGFSAYPRNLDFAKFREIADKVGAYLMADIAHIAGLVAAGEHQSPIPHAHIVTSTTNKTL-------------RGPR-GGLILSNDE-----EIGKKINSALFPGLQGGPLMHIIAAKAVAFLESLQP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROMP (Serine hydroxymethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 80/206 (38.83%), Postives = 123/206 (59.71%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+G+D   GGHL+HG        V+ +  +F +  Y V+ +T  +++ ++ + A+  +PK++ICG S+YPR+ D+  FR+IAD+ GA LM D+AHI+GL+A K   +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANAAVFLSLLKPGDTILGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVDKETNKLNFNEIRDIALATKPKLIICGYSAYPRKIDFESFRRIADEVGAFLMADIAHIAGLVATKLHPNPIPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDKEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALKP 280
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOMG4.277e-3439.32Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_EUBR34.277e-3442.23Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_XANCP5.586e-3442.23Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANCB5.586e-3442.23Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC85.586e-3442.23Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_SYNJA5.586e-3440.29Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_RICCK5.586e-3441.26Serine hydroxymethyltransferase OS=Rickettsia cana... [more]
GLYA_RICBR5.586e-3440.78Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_RICB85.586e-3440.78Serine hydroxymethyltransferase OS=Rickettsia bell... [more]
GLYA_PROMP5.586e-3438.83Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
back to top