CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NOVAD (Serine hydroxymethyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 84/205 (40.98%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F+  PY V      ID +++   A + +PK++I GG++Y R WD+ RFR+IAD+ GA L+ DM+H SGL+A     SPF +  +VTSTTHKSL             + PR  GI L + +     D  ++ N AV P +QGGP  + IAA A+A  +   P
Sbjct:  114 NQAVFLALLQPGDSFMGLDLNSGGHLTHG------SPVNMSGKWFKPIPYGVRADDHLIDMDEVARLARENKPKLIIAGGTAYSRVWDFKRFREIADEVGAWLLVDMSHFSGLVAGGAHPSPFPHAHVVTSTTHKSL-------------RGPR-SGIILTNDE-----DLAKKFNMAVFPGMQGGPLVHVIAAKAVAFGEALRP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACLS (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+ PGD ++G+D  +GGHL+HG        V+ +   +   PY VNPQT  +DYE++ + A + +PK+++ G S+Y R  D+ +FRQI D  GA LM DMAHI+GL+A     +P  Y D+VT+TTHK+L             + PR   I  N      +    ++IN A+ P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIQPGDTVLGMDLNAGGHLTHG------ASVNFSGKTYHFVPYGVNPQTELLDYEEILKIAKEVQPKLIVAGASAYSRLIDFAKFRQITDSVGAKLMVDMAHIAGLVATDAHPNPLPYADVVTTTTHKTL-------------RGPRGGMILTN------DEVLAKKINSAIFPGTQGGPLEHVIAAKAVAFKEALDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +L PGDRIMGLD   GGHL+HG        V+ +   F++  Y V+ +TG ID  ++EE A++ RPK++ICG S+Y + +D+  FR+IADK GA+LM D+AH +GLIAA  L+ P  +C  VT+TTHK+L              +    GI +    G       E ++  V P +QGGP  + IA  A+A  +   P
Sbjct:   99 ANMAVLFSVLKPGDRIMGLDLSHGGHLTHG------SPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAYSQGFDFKAFREIADKVGALLMADIAHPAGLIAAGLLSDPMPHCHFVTTTTHKTLRGPRGGMIMMGSDFE-NPLGITIKTKTGSRVKMMSEVMDAEVMPGIQGGPLMHIIAGKAVAFGEALQP 297          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_ERWCT (Serine hydroxymethyltransferase 2 OS=Erwinia carotovora subsp. atroseptica GN=glyA2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 84/206 (40.78%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  L  PGD +MG++   GGHL+HG  +      + +   ++  PY ++ +TG IDY+++E  A++ RPK+LI G S+Y R  D+ R R IADK GA+   DMAH++GL+AA E  +P     +VTSTTHK+L             + PR  GI L  G    + DF +++N AV P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANAAVFLALTNPGDTVMGMNLAQGGHLTHGNPS------NFSGRHYKIVPYGLDSETGLIDYDEMERIALETRPKMLIGGFSAYSRHKDWARMRTIADKVGAIFWVDMAHVAGLVAAGEYPNPLPQAHVVTSTTHKTL-------------RGPR-GGIILAKG---QSEDFYKKLNAAVFPGIQGGPLMHVIAAKAVAFKEALRP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELUB (Serine hydroxymethyltransferase OS=Pelagibacter ubique GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD  MG+   SGGH++HG       K+S +  +F    Y V+ ++  IDY+ +E+ A++++PK++ICGGS+Y R  D+ RFR+IADK GA LM DMAH SGL+A K   +P ++  +VTSTTHK                +  + GI L + +     D  ++ N AV P  QGGP  + IA  A    +   P
Sbjct:  113 ANGAVFLALLNPGDTFMGMSLNSGGHITHGL------KISMSGKWFNPIGYDVDKESELIDYDNVEKLALEHKPKLIICGGSAYSRVIDFKRFREIADKVGAYLMVDMAHFSGLVAGKGYPNPCEHAHVVTSTTHKVF--------------RSARGGIILTNHE-----DLAKKFNTAVFPGYQGGPLMHVIAGKAAGFLEALRP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 83/205 (40.49%), Postives = 117/205 (57.07%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY   L PGD I+G++   GGHLSHG        V+ +  +++  PY V     YIDY++L + A +  PKI++ G S+YPR  D+  FR+IAD+ GA+LM DMAHI+GL+AA    SP  Y D+VT+TTHK+L             + PR        G      ++ ++I+ AV P  QGGP  + IAA A++ K+  T
Sbjct:  100 ANTAVYFAFLNPGDTILGMNLAHGGHLSHG------SPVNISGKYYKVVPYGVREDNCYIDYDELRKTAKENSPKIIVAGASAYPRILDFKAFREIADEVGAILMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTL-------------RGPR-------GGMILCKQEYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEALT 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ANAVT (Serine hydroxymethyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD+IMG+D   GGHL+HG        V+ +  +F+   Y V+ QT  +DY+++ E A+  RPK+LICG S+YPR  D+ +FR IAD+ GA L+ D+AHI+GL+A+     P  YC +VT+TTHK+L             + PR  G  +  GD     +  ++++ +V P  QGGP  + IA  A+A  +   P
Sbjct:  102 ANFAVFLTLLAPGDKIMGMDLSHGGHLTHG------SPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVASGLHPDPIPYCHVVTTTTHKTL-------------RGPR--GGLILTGDA----ELGKKLDKSVFPGSQGGPLEHVIAGKAVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 81/206 (39.32%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G+    GGHL+HG       KVS +   + +  Y +NP+TG IDYE++E  A++++P++++ G S+Y +  D+ RFR IADK GA L  DMAH++GL+AA    +P    D+ T+TTHK+L             + PR  G+ L      +N + E+++  AV P  QGGP  + +AA AI  K+   P
Sbjct:  100 ANSAVYLALLNPGDTVLGMSLAHGGHLTHG------AKVSFSGKTYNAIQYGLNPETGEIDYEEVERLALEHKPRMIVAGFSAYSQIVDWQRFRDIADKIGAYLFVDMAHVAGLVAAGVYPNPVQIADVTTTTTHKTL-------------RGPR-SGLIL----AKANEEIEKKLQSAVFPGNQGGPLVHAVAAKAICFKEAMAP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   L+ PGD I+G+   +GGHL+HG       K + +  +F +  Y V      IDY+++   A++++PK++I GGS+ PR+ D+ +FR+IAD+ GA+LM DMAHI+GL+AA    +P  + D+VT+TTHK+L             + PR   I  N      N D  ++IN AV P LQGGP  + IAA A+AL +V  P
Sbjct:  111 ANGAVMLALVKPGDTILGMSLDAGGHLTHG------AKPAQSGKWFNAIHYGVRKDDMRIDYDQVLALAIEHQPKMIIAGGSAIPRQIDFAKFREIADQVGAILMVDMAHIAGLVAAGAHQNPLPFADVVTTTTHKTL-------------RGPRGGLILTN------NPDVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEP 291          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEAE (Serine hydroxymethyltransferase 2 OS=Pseudomonas aeruginosa GN=glyA2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 81/206 (39.32%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL  GD I+G+    GGHL+HG       KVS++   + +  Y ++  TG IDY+++E  A++++PK+++ G S+Y +  D+ RFR IADK GA+L  DMAH++GL+AA    +P  + D+VT+TTHK+L             + PR  G+ L      +N + E+++N AV P  QGGP  + IAA A+  K+   P
Sbjct:  101 ANAAVYLALLNAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTL-------------RGPR-GGLILAR----ANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEALEP 282          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_NOVAD5.586e-3440.98Serine hydroxymethyltransferase OS=Novosphingobium... [more]
GLYA_LACLS5.586e-3439.32Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_CHLL25.586e-3440.29Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA2_ERWCT5.586e-3440.78Serine hydroxymethyltransferase 2 OS=Erwinia carot... [more]
GLYA_PELUB7.295e-3439.32Serine hydroxymethyltransferase OS=Pelagibacter ub... [more]
GLYA_CLOCE7.295e-3440.49Serine hydroxymethyltransferase OS=Clostridium cel... [more]
GLYA_ANAVT7.295e-3440.29Serine hydroxymethyltransferase OS=Anabaena variab... [more]
GLYA_ACIRA7.295e-3439.32Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA3_COLP37.295e-3440.78Serine hydroxymethyltransferase 3 OS=Colwellia psy... [more]
GLYA2_PSEAE7.295e-3439.32Serine hydroxymethyltransferase 2 OS=Pseudomonas a... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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