CX309079
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NOVAD (Serine hydroxymethyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glyA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34 Identity = 84/205 (40.98%), Postives = 116/205 (56.59%), Query Frame = 2 Query: 5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 N AV+ LL PGD MGLD SGGHL+HG V+ + +F+ PY V ID +++ A + +PK++I GG++Y R WD+ RFR+IAD+ GA L+ DM+H SGL+A SPF + +VTSTTHKSL + PR GI L + + D ++ N AV P +QGGP + IAA A+A + P Sbjct: 114 NQAVFLALLQPGDSFMGLDLNSGGHLTHG------SPVNMSGKWFKPIPYGVRADDHLIDMDEVARLARENKPKLIIAGGTAYSRVWDFKRFREIADEVGAWLLVDMSHFSGLVAGGAHPSPFPHAHVVTSTTHKSL-------------RGPR-SGIILTNDE-----DLAKKFNMAVFPGMQGGPLVHVIAAKAVAFGEALRP 293
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACLS (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glyA PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34 Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN A Y L+ PGD ++G+D +GGHL+HG V+ + + PY VNPQT +DYE++ + A + +PK+++ G S+Y R D+ +FRQI D GA LM DMAHI+GL+A +P Y D+VT+TTHK+L + PR I N + ++IN A+ P QGGP + IAA A+A K+ P Sbjct: 101 ANAAAYMALIQPGDTVLGMDLNAGGHLTHG------ASVNFSGKTYHFVPYGVNPQTELLDYEEILKIAKEVQPKLIVAGASAYSRLIDFAKFRQITDSVGAKLMVDMAHIAGLVATDAHPNPLPYADVVTTTTHKTL-------------RGPRGGMILTN------DEVLAKKINSAIFPGTQGGPLEHVIAAKAVAFKEALDP 281
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34 Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV +L PGDRIMGLD GGHL+HG V+ + F++ Y V+ +TG ID ++EE A++ RPK++ICG S+Y + +D+ FR+IADK GA+LM D+AH +GLIAA L+ P +C VT+TTHK+L + GI + G E ++ V P +QGGP + IA A+A + P Sbjct: 99 ANMAVLFSVLKPGDRIMGLDLSHGGHLTHG------SPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAYSQGFDFKAFREIADKVGALLMADIAHPAGLIAAGLLSDPMPHCHFVTTTTHKTLRGPRGGMIMMGSDFE-NPLGITIKTKTGSRVKMMSEVMDAEVMPGIQGGPLMHIIAGKAVAFGEALQP 297
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_ERWCT (Serine hydroxymethyltransferase 2 OS=Erwinia carotovora subsp. atroseptica GN=glyA2 PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34 Identity = 84/206 (40.78%), Postives = 121/206 (58.74%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV+ L PGD +MG++ GGHL+HG + + + ++ PY ++ +TG IDY+++E A++ RPK+LI G S+Y R D+ R R IADK GA+ DMAH++GL+AA E +P +VTSTTHK+L + PR GI L G + DF +++N AV P +QGGP + IAA A+A K+ P Sbjct: 101 ANAAVFLALTNPGDTVMGMNLAQGGHLTHGNPS------NFSGRHYKIVPYGLDSETGLIDYDEMERIALETRPKMLIGGFSAYSRHKDWARMRTIADKVGAIFWVDMAHVAGLVAAGEYPNPLPQAHVVTSTTHKTL-------------RGPR-GGIILAKG---QSEDFYKKLNAAVFPGIQGGPLMHVIAAKAVAFKEALRP 283
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELUB (Serine hydroxymethyltransferase OS=Pelagibacter ubique GN=glyA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 81/206 (39.32%), Postives = 116/206 (56.31%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV+ LL PGD MG+ SGGH++HG K+S + +F Y V+ ++ IDY+ +E+ A++++PK++ICGGS+Y R D+ RFR+IADK GA LM DMAH SGL+A K +P ++ +VTSTTHK + + GI L + + D ++ N AV P QGGP + IA A + P Sbjct: 113 ANGAVFLALLNPGDTFMGMSLNSGGHITHGL------KISMSGKWFNPIGYDVDKESELIDYDNVEKLALEHKPKLIICGGSAYSRVIDFKRFREIADKVGAYLMVDMAHFSGLVAGKGYPNPCEHAHVVTSTTHKVF--------------RSARGGIILTNHE-----DLAKKFNTAVFPGYQGGPLMHVIAGKAAGFLEALRP 293
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 83/205 (40.49%), Postives = 117/205 (57.07%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 AN AVY L PGD I+G++ GGHLSHG V+ + +++ PY V YIDY++L + A + PKI++ G S+YPR D+ FR+IAD+ GA+LM DMAHI+GL+AA SP Y D+VT+TTHK+L + PR G ++ ++I+ AV P QGGP + IAA A++ K+ T Sbjct: 100 ANTAVYFAFLNPGDTILGMNLAHGGHLSHG------SPVNISGKYYKVVPYGVREDNCYIDYDELRKTAKENSPKIIVAGASAYPRILDFKAFREIADEVGAILMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTL-------------RGPR-------GGMILCKQEYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEALT 278
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ANAVT (Serine hydroxymethyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glyA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANFAV+ LL PGD+IMG+D GGHL+HG V+ + +F+ Y V+ QT +DY+++ E A+ RPK+LICG S+YPR D+ +FR IAD+ GA L+ D+AHI+GL+A+ P YC +VT+TTHK+L + PR G + GD + ++++ +V P QGGP + IA A+A + P Sbjct: 102 ANFAVFLTLLAPGDKIMGMDLSHGGHLTHG------SPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVASGLHPDPIPYCHVVTTTTHKTL-------------RGPR--GGLILTGDA----ELGKKLDKSVFPGSQGGPLEHVIAGKAVAFGEALKP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 81/206 (39.32%), Postives = 120/206 (58.25%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD ++G+ GGHL+HG KVS + + + Y +NP+TG IDYE++E A++++P++++ G S+Y + D+ RFR IADK GA L DMAH++GL+AA +P D+ T+TTHK+L + PR G+ L +N + E+++ AV P QGGP + +AA AI K+ P Sbjct: 100 ANSAVYLALLNPGDTVLGMSLAHGGHLTHG------AKVSFSGKTYNAIQYGLNPETGEIDYEEVERLALEHKPRMIVAGFSAYSQIVDWQRFRDIADKIGAYLFVDMAHVAGLVAAGVYPNPVQIADVTTTTTHKTL-------------RGPR-SGLIL----AKANEEIEKKLQSAVFPGNQGGPLVHAVAAKAICFKEAMAP 281
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA3_COLP3 (Serine hydroxymethyltransferase 3 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA3 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 84/206 (40.78%), Postives = 122/206 (59.22%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV L+ PGD I+G+ +GGHL+HG K + + +F + Y V IDY+++ A++++PK++I GGS+ PR+ D+ +FR+IAD+ GA+LM DMAHI+GL+AA +P + D+VT+TTHK+L + PR I N N D ++IN AV P LQGGP + IAA A+AL +V P Sbjct: 111 ANGAVMLALVKPGDTILGMSLDAGGHLTHG------AKPAQSGKWFNAIHYGVRKDDMRIDYDQVLALAIEHQPKMIIAGGSAIPRQIDFAKFREIADQVGAILMVDMAHIAGLVAAGAHQNPLPFADVVTTTTHKTL-------------RGPRGGLILTN------NPDVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEP 291
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEAE (Serine hydroxymethyltransferase 2 OS=Pseudomonas aeruginosa GN=glyA2 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 81/206 (39.32%), Postives = 122/206 (59.22%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL GD I+G+ GGHL+HG KVS++ + + Y ++ TG IDY+++E A++++PK+++ G S+Y + D+ RFR IADK GA+L DMAH++GL+AA +P + D+VT+TTHK+L + PR G+ L +N + E+++N AV P QGGP + IAA A+ K+ P Sbjct: 101 ANAAVYLALLNAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTL-------------RGPR-GGLILAR----ANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEALEP 282 The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bpback to top |