CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEAE (Serine hydroxymethyltransferase 1 OS=Pseudomonas aeruginosa GN=glyA1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 81/206 (39.32%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL  GD I+G+    GGHL+HG       KVS++   + +  Y ++  TG IDY+++E  A++++PK+++ G S+Y +  D+ RFR IADK GA+L  DMAH++GL+AA    +P  + D+VT+TTHK+L             + PR  G+ L      +N + E+++N AV P  QGGP  + IAA A+  K+   P
Sbjct:  101 ANAAVYLALLNAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTL-------------RGPR-GGLILAR----ANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_BORBR (Serine hydroxymethyltransferase 1 OS=Bordetella bronchiseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34
Identity = 86/206 (41.75%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGDRI+GLD  +GGHL+HG H      V+ +  +FE+  Y V+P +  ID +++E  A   RP+++I GGS+Y R  D+ RFR IAD  GA+ + DMAH +GL+A     SP  +  + T+TTHK+L             + PR  G+ L       + D   RI+ AV P LQGGP  + IAA A+AL +   P
Sbjct:  112 ANQAVYLALLAPGDRILGLDLKAGGHLTHGAH------VNLSGKWFEALSYGVDPVSHRIDMDEVERTARRERPRLIIAGGSAYARVPDFARFRAIADATGALFVADMAHYAGLVAGGAFPSPVPFAHVTTTTTHKTL-------------RGPR-GGMILT-----DDADIARRIDAAVFPGLQGGPLMHVIAAKAVALGEALQP 292          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SULNB (Serine hydroxymethyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 85/201 (42.29%), Postives = 117/201 (58.21%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALK 604
            AN AVY  L+  GD+I+G+D   GGHL+HG       K S +   + SF Y V    G I+Y+++ E A   +PKI++CG S+Y RE D+ +FR+IAD+ GA+L  D+AHI+GL+ A E  SPF Y D+VT+TTHK+L               PR   I  N      + D  ++IN A+ P LQGGP  + IAA A+  K
Sbjct:   98 ANGAVYAALIKAGDKILGMDLSHGGHLTHG------SKPSFSGKNYHSFTYGVELD-GRINYDRVMEIAKIVQPKIIVCGASAYAREIDFKKFREIADEVGAILFADIAHIAGLVCAGEHPSPFPYADVVTTTTHKTLAG-------------PRGGMIMTN------DEDIAKKINSAIFPGLQGGPLVHVIAAKAVGFK 272          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRGC (Serine hydroxymethyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 81/206 (39.32%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+ PGD +MG+D  +GGHL+HG        VS +   +    Y V+P+T  +D++ + ++A + +PK+++ G S+Y    D+ +FR+IAD  GA LM DMAHI+GL+AA    SP  Y DI T+TTHK+L             + PR  G+ L + +     D  ++IN A+ P +QGGP  + IAA A+A K+V  P
Sbjct:  101 ANCAAYMALIEPGDTVMGMDLSAGGHLTHG------ASVSFSGQTYNFVSYSVDPETELLDFDAILKQAKEVQPKLIVAGASAYSHIIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYADITTTTTHKTL-------------RGPR-GGLILTNDE-----DLAKKINSAIFPGIQGGPLEHVIAAKAVAFKEVLDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RHIL3 (Serine hydroxymethyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 84/205 (40.98%), Postives = 115/205 (56.10%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++  KA + +PK++I GG++Y R WD+ RFR+IAD  GA LM DMAHI+GL+A     SPF +C + T+TTHKSL             + PR  G+ L + +     D  ++ N AV P LQGGP  + IAA A+A  +   P
Sbjct:  108 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREGDNLLDMDEVARKAEETKPKLIIAGGTAYSRIWDWKRFREIADSVGAYLMVDMAHIAGLVAGGVHPSPFPHCHVATTTTHKSL-------------RGPR-GGVILTNDE-----DLAKKFNSAVFPGLQGGPLMHIIAAKAVAFGEALQP 287          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NOSP7 (Serine hydroxymethyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD+IMG+D   GGHL+HG        V+ +  +F+   Y V+ QT  +DY+++ E A+  RPK+LICG S+YPR  D+ +FR IAD+ GA L+ D+AHI+GL+A+     P  +C +VT+TTHK+L             + PR  G+ L      S+ +  ++++ +V P  QGGP  + IA  A+A  +   P
Sbjct:  102 ANFAVFLSLLQPGDKIMGMDLSHGGHLTHG------SPVNVSGKWFQVSHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVASGLHPDPIPHCHVVTTTTHKTL-------------RGPR-GGLILT-----SDAELGKKLDKSVFPGTQGGPLEHVIAGKAVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCHJ (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD+I+GLD  +GGHLSHGY      K++ + +F+    Y ++ +   +DY+ +E+ A+  +P ++ICG S+Y R+ D+ RFRQIADK  A L+ D+AHI+GLIAA +  SP  Y  I+TSTT K+L             + PR   I  N      + +   +I+  V P +QGGP  + IAA A+A K+   P
Sbjct:   98 ANAAVFAALLKPGDKILGLDLNAGGHLSHGY------KINFSGMFYSGISYFLD-ENELLDYDAIEKIALKTKPNLIICGYSAYSRKIDFARFRQIADKVNAFLLADIAHIAGLIAAGQHPSPVGYAHIITSTTQKTL-------------RGPRGGLILTN------SKEIAAKIDKVVFPGIQGGPFFHTIAAKAVAFKEALEP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCH2 (Serine hydroxymethyltransferase OS=Mycoplasma hyopneumoniae (strain 232) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 83/206 (40.29%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD+I+GLD  +GGHLSHGY      K++ + +F+    Y ++ +   +DY+ +E+ A+  +P ++ICG S+Y R+ D+ RFRQIADK  A L+ D+AHI+GLIAA +  SP  Y  I+TSTT K+L             + PR   I  N      + +   +I+  V P +QGGP  + IAA A+A K+   P
Sbjct:   98 ANAAVFAALLKPGDKILGLDLNAGGHLSHGY------KINFSGMFYSGISYFLD-ENELLDYDAIEKIALKTKPNLIICGYSAYSRKIDFARFRQIADKVNAFLLADIAHIAGLIAAGQHPSPVGYAHIITSTTQKTL-------------RGPRGGLILTN------SKEIAAKIDKVVFPGIQGGPFFHTIAAKAVAFKEALEP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA5 (Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 81/206 (39.32%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A+Y  LL PGD ++GL   SGGHL+HGY      ++S + IF++S+ Y VN Q G +DY+++ + A + +PK++ICG S+Y +  D+ +FR+IAD  GA L  D+AHISGL+ A    SP  Y D+V +TTHK+L              +  +  I L      +N +  ++I+ AV P  QGGP  + IAA A++  +   P
Sbjct:   98 ANAAIYMALLNPGDSVLGLSLDSGGHLTHGY------RISFSGIFYKSYTYTVN-QDGVLDYDEILKIAQEVKPKMIICGYSAYSQIVDFAKFREIADAVGAYLFADIAHISGLVIANLHPSPMGYADVVATTTHKTL--------------RGTRGAIILT-----NNEEIAKKIDRAVFPGNQGGPLFHQIAAKAVSFYEALQP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELHP (Serine hydroxymethyltransferase OS=Helicobacter hepaticus GN=glyA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.527e-34
Identity = 85/206 (41.26%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L P D+I+G+D   GGHL+HG       KVS +   ++SF Y V    G IDY+KL  +A   +P +L+CG S+Y RE D+ R R+IAD  GA LM D+AH++GL+ A E  +PF +C IVT+TTHK+L             + PR   I  N      + +   +IN AV P +QGGP  + IA  A+  K+   P
Sbjct:   98 ANAAVYAAILKPYDKILGMDLSHGGHLTHG------AKVSTSGQLYQSFFYGVE-LNGRIDYDKLALQAQVVKPNVLVCGFSAYTRELDFKRLREIADSVGAYLMGDIAHVAGLVVAGEYPNPFPHCHIVTTTTHKTL-------------RGPRGGAILTN------DEELYAKINKAVFPGIQGGPLMHIIAGKAVGFKENLKP 277          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_PSEAE7.295e-3439.32Serine hydroxymethyltransferase 1 OS=Pseudomonas a... [more]
GLYA1_BORBR7.295e-3441.75Serine hydroxymethyltransferase 1 OS=Bordetella br... [more]
GLYA_SULNB9.527e-3442.29Serine hydroxymethyltransferase OS=Sulfurovum sp. ... [more]
GLYA_STRGC9.527e-3439.32Serine hydroxymethyltransferase OS=Streptococcus g... [more]
GLYA_RHIL39.527e-3440.98Serine hydroxymethyltransferase OS=Rhizobium legum... [more]
GLYA_NOSP79.527e-3439.81Serine hydroxymethyltransferase OS=Nostoc punctifo... [more]
GLYA_MYCHJ9.527e-3440.29Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_MYCH29.527e-3440.29Serine hydroxymethyltransferase OS=Mycoplasma hyop... [more]
GLYA_MYCA59.527e-3439.32Serine hydroxymethyltransferase OS=Mycoplasma arth... [more]
GLYA_HELHP9.527e-3441.26Serine hydroxymethyltransferase OS=Helicobacter he... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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