CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSF (Serine hydroxymethyltransferase OS=Geobacter sp. (strain FRC-32) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 80/206 (38.83%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G++   GGHL+HG        V+ +  FF   PY V  ++  IDY ++E  A++++PK+++ G S+YPR  D+  FR+IADK GAV+M DMAHI+GL+AA    SP  + + VT+TTHK+L             + PR        G      +F + +N  + P +QGGP  + IAA A+A K+  +P
Sbjct:   97 ANMAVYFTVLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKFFNIVPYGVTKESQTIDYAEVERLAVEHKPKMIVVGASAYPRTIDFAAFRKIADKVGAVVMVDMAHIAGLVAAGLHPSPVPHAEFVTTTTHKTL-------------RGPR-------GGMILCREEFAKALNSNIFPGIQGGPLMHVIAAKAVAFKEALSP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+T LL PGD I+G+    GGHL+HG        V+ +  ++    Y V+ QTG IDY+ L  KA   RPK++  G S+YPR  D+ R RQIAD+ GA+LM D+AHI+GL+AA E  SP  +  ++T+TTHK+L             + PR  G  +  GD     DF +++N +V P  QGGP  + IA  A+A  +   P
Sbjct:   98 ANIAVFTALLQPGDTILGMRLDHGGHLTHG------SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKARAIRPKLITSGASAYPRIIDFARMRQIADEVGALLMADIAHIAGLVAAGEHPSPVGHAHVITTTTHKTL-------------RGPR--GGLILMGD-----DFAKQLNSSVFPGTQGGPLMHVIAGKAVAFGEALRP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 84/206 (40.78%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+T LL PGD I+G+    GGHL+HG        V+ +  ++    Y V+PQTG IDY+ L  KA   RPK++  G S+YPR  D+ R RQIAD+ GA+LM D+AHI+GL+A  E  SP  +  I+T+TTHK+L             + PR   I +         +F ++IN +V P  QGGP  + IA  A+A  +   P
Sbjct:   98 ANIAVFTALLQPGDTILGMRLDHGGHLTHG------SPVNFSGKWYNVHFYGVDPQTGQIDYDDLAAKARAIRPKLITSGASAYPRLIDFARMRQIADEVGALLMADIAHIAGLVATGEHPSPVGHAHIITTTTHKTL-------------RGPRGGLILMGE-------EFAKQINSSVFPGTQGGPLMHVIAGKAVAFGEALRP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMFF (Serine hydroxymethyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 83/201 (41.29%), Postives = 118/201 (58.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALK 604
            AN  VY   L PGD+I+G+D   GGHL+HG       KVS++   +ESF Y V    G I+Y K+EE A   +PK+++CG S+Y RE D+ +FR+IAD  GA L  D+AHI+GL+ A E  +PF +C +V+STTHK+L             + PR   I  N      + +F ++IN ++ P +QGGP  + IA  A+  K
Sbjct:   96 ANQGVYGAFLKPGDKILGMDLSHGGHLTHG------SKVSSSGKNYESFFYGVELD-GRINYNKVEEIANITKPKMIVCGASAYAREIDFKKFREIADSVGAYLFADVAHIAGLVVAGEHNNPFPHCHVVSSTTHKTL-------------RGPRGGIIMTN------DEEFAKKINSSIFPGIQGGPLMHVIAGKAVGFK 270          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_HAHCH (Serine hydroxymethyltransferase 2 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.122e-33
Identity = 82/205 (40.00%), Postives = 117/205 (57.07%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY  L  PGD I+G+    GGHL+HG        VS +   +++  Y +NP+TG IDYE++ + A + +PK+++ G S+Y R  D+ RFR IAD+ GA L  DMAHI+GL+AA    SP    D+ T+TTHK+L                 + G+ L      +N + E+++NFAV P  QGGP  + IAA A+  K+  T
Sbjct:  101 ANAAVYMALCKPGDVILGMSLAHGGHLTHG------ASVSFSGRIYKAVQYGLNPETGEIDYEEVAKLARENKPKMIVAGFSAYSRVIDWERFRAIADEVGAYLFVDMAHIAGLVAAGVYPSPVQIADVTTTTTHKTLGGP--------------RGGLIL----AKANEELEKKLNFAVFPESQGGPLMHVIAAKAVCFKEAMT 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRSV (Serine hydroxymethyltransferase OS=Streptococcus sanguinis (strain SK36) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 79/206 (38.35%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+ PGD +MG+D  +GGHL+HG        VS +   +    Y V+P+T  +D++ + ++A + +PK+++ G S+Y    D+ +FR+IAD  GA LM DMAHI+GL+AA    SP  Y DI T+TTHK+L             + PR  G+ L + +     +  ++IN A+ P +QGGP  + +AA A+A K+V  P
Sbjct:  101 ANCAAYMALIEPGDTVMGMDLSAGGHLTHG------ASVSFSGQTYNFVSYSVDPETELLDFDAILQQAKEVQPKLIVAGASAYSHIIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYADITTTTTHKTL-------------RGPR-GGLILTNDE-----ELAKKINSAIFPGIQGGPLEHVVAAKAVAFKEVLDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RICTY (Serine hydroxymethyltransferase OS=Rickettsia typhi GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 87/209 (41.63%), Postives = 119/209 (56.94%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEE---RINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D I+G+   SGGHL+HG         + +  +F +  Y V+ +T  IDY++++  A+ + PK+LI G S+YPR+ D+ RFR+IADK GA LM D+AHI+GL+A  E  SP  Y  +VTSTTHK+L             + PR          G    D+EE   +IN A+ P LQGGP  + IAA A+A  +   P
Sbjct:  101 ANQAVYLALLQPCDTILGMSLDSGGHLTHG------AAPNISGKWFNTVAYNVDKETYLIDYDEIKRLAVLHNPKLLIAGFSAYPRKIDFARFREIADKVGAYLMADIAHIAGLVATGEHQSPIPYAHVVTSTTHKTL-------------RGPR---------GGLILSDYEEIGKKINSALFPGLQGGPLMHVIAAKAVAFLENLQP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM5 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9515) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 80/206 (38.83%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+G+D   GGHL+HG        V+ +  +F +  Y V+ +T  +++  + + A+  +PK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A+K   +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANAAVFLSLLNPGDTILGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVDKETNKLNFNVIRDIALATKPKLIICGYSAYPRTIDFKSFRSIADEVGAFLMADIAHIAGLVASKLHPNPIPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDKEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 84/206 (40.78%), Postives = 113/206 (54.85%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +L PGDRIMGLD   GGHL+HG        V+ +   +E+  Y V+ +TG ID  K+EE A+  RPK++ICG S+Y + +D   FR IADK GA LM D+AH +GLIAA  L +P  +C  VT+TTHK+L              +    GI +    G       E ++  V P +QGGP  + IA  A+A  +   P
Sbjct:   99 ANMAVLFSVLKPGDRIMGLDLSHGGHLTHG------SSVNFSGQMYEAHSYGVDRETGCIDMNKVEELALQVRPKLIICGASAYSQGFDVKAFRVIADKVGAFLMADIAHPAGLIAAGLLGNPLPHCHFVTTTTHKTLRGPRGGMIMMGSDFE-NPMGITIKTKTGSRLKMMSEVMDAEVMPGIQGGPLMHIIAGKAVAFGEALQP 297          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCGA (Serine hydroxymethyltransferase OS=Mycoplasma gallisepticum GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.772e-33
Identity = 81/206 (39.32%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  LL P D+++ +    GGHL+HG       KV+ +   ++ + Y V+P T  +DY+++ +KA++ +PK+++CG S+Y R  D+ +FRQIAD   A LM D+AHI+GLI A    +P +YCDI+TSTTHK+L             + PR  GI L + +     D  ++I+ AV P   GGP  + IAA AIA  +   P
Sbjct:   94 ANAAAYLALLQPHDKVLAMGLNDGGHLTHG------SKVNFSGKIYDFYHYNVDPNTYLLDYDEILKKAIEVKPKLIVCGASNYSRAIDFAKFRQIADHVSAYLMADIAHIAGLIVAGYHQNPVEYCDIITSTTHKTL-------------RGPR-GGIILTNRE-----DLIKKIDSAVFPGELGGPLMHVIAAKAIAFDEALQP 274          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOSF2.122e-3338.83Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_CHLSY2.122e-3341.26Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_CHLAD2.122e-3340.78Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]
GLYA_CAMFF2.122e-3341.29Serine hydroxymethyltransferase OS=Campylobacter f... [more]
GLYA2_HAHCH2.122e-3340.00Serine hydroxymethyltransferase 2 OS=Hahella cheju... [more]
GLYA_STRSV2.772e-3338.35Serine hydroxymethyltransferase OS=Streptococcus s... [more]
GLYA_RICTY2.772e-3341.63Serine hydroxymethyltransferase OS=Rickettsia typh... [more]
GLYA_PROM52.772e-3338.83Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PELPB2.772e-3340.78Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_MYCGA2.772e-3339.32Serine hydroxymethyltransferase OS=Mycoplasma gall... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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