CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_BURPS (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei GN=glyA2 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.165e-31
Identity = 80/205 (39.02%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD ++G+   +GGHL+HG       K + +  +F +  Y V+  T  IDY+++E  A  ++P ++I G S+YPR+ D+ RFR IAD  GA LM DMAHI+G+IAA   A+P ++  +VTSTTHK+L             + PR   +  N      + +  ++IN AV P LQGGP  + IA  A+A  +  T
Sbjct:  105 ANGAVMLALAKPGDTVLGMSLDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL-------------RGPRGGFVLTN------DEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALT 284          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_BURP1 (Serine hydroxymethyltransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.165e-31
Identity = 80/205 (39.02%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD ++G+   +GGHL+HG       K + +  +F +  Y V+  T  IDY+++E  A  ++P ++I G S+YPR+ D+ RFR IAD  GA LM DMAHI+G+IAA   A+P ++  +VTSTTHK+L             + PR   +  N      + +  ++IN AV P LQGGP  + IA  A+A  +  T
Sbjct:  105 ANGAVMLALAKPGDTVLGMSLDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL-------------RGPRGGFVLTN------DEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALT 284          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THELT (Serine hydroxymethyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 78/202 (38.61%), Postives = 113/202 (55.94%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN A Y  +  PGD +MG+    GGHL+HG        V+ +   F+   Y VNP+T  I+Y+++   A+ Y+PKI++ GGS+Y R  D+ +FR+IAD+ GA L+ DMAH +GL+AA    +P +Y  IVTSTTHK+L             + PR   I  N      + +  + +N  V P  QGGP  + IAA A+  K+
Sbjct:   98 ANMAAYLSIAEPGDVLMGMSLSHGGHLTHG------ASVNFSGKLFKVIQYGVNPETEMINYDEVRSMALQYKPKIIVAGGSAYSRIIDFKKFREIADEAGAYLVVDMAHFAGLVAAGLYPNPAEYAHIVTSTTHKTL-------------RGPRGGLILTN------DAEIYKAVNKTVFPGTQGGPLMHVIAAKAVCFKE 274          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHEHH (Serine hydroxymethyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL  GD ++G+    GGHL+HG H      VS +   + +  Y ++  TG IDY ++E  A++++PK++I G S+Y    D+G+FR+IADK GA L  DMAH++GL+AA    SP  +  +VT+TTHK+L                 + G+ L+     ++ D  +++N AV P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANAAVFMALLQGGDTVLGMSLAHGGHLTHGSH------VSFSGKLYNAVQYGIDETTGKIDYAEVERLAVEHKPKMIIAGFSAYSGIVDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPSPMPHAHVVTTTTHKTLAGP--------------RGGLILS---AINDEDIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALDP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NITEC (Serine hydroxymethyltransferase OS=Nitrosomonas eutropha (strain C91) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 81/206 (39.32%), Postives = 114/206 (55.34%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY   L PGD ++G+    GGHL+HG        V+ +   F S  Y ++P+T  IDY +LE+ A +++P++++ G SSY R  D+  FR+IAD  GA L  DMAH +GLIAA    +P    D VTS+THK+L             + PR        G   +  + E+ +N AV P  QGGP  + IAA A+A K+ A+P
Sbjct:  101 ANAAVYLSALKPGDTLLGMSLAHGGHLTHG------APVNMSGKIFNSIAYGLDPETEEIDYTELEQLAHEHKPRMIVAGASSYARVIDWQAFRKIADNVGAYLFVDMAHYAGLIAAGYYPNPVGIADFVTSSTHKTL-------------RGPR-------GGVIMAKPEHEKALNSAVFPQTQGGPLMHVIAAKAVAFKEAASP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOKA (Serine hydroxymethyltransferase OS=Geobacillus kaustophilus GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 80/200 (40.00%), Postives = 115/200 (57.50%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIAL 601
            AN AVY  +L  GD ++G++   GGHL+HG        V+ + I +    Y V+P+T  IDY+ + EKA  +RPK+++ G S+YPR  D+ +FR+IAD+ GA LM DMAHI+GL+AA    +P  Y   VT+TTHK+L             + PR        G       F ++I+ A+ P +QGGP  + IAA A+AL
Sbjct:   97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHG------SPVNFSGIQYNFVEYGVDPETHVIDYDDVREKARLHRPKLIVAGASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGVHPNPVPYAHFVTTTTHKTL-------------RGPR-------GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAL 270          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G+D   GGHL+HG        V+ +   F    Y V+ +T  IDYE + + A++ +PK+++ G S+Y R  D+ +FR+IAD+ GA+LM DMAHI+GL+AA    SP  Y D VT+TTHK+L             + PR  G+ L     C    + + +N  + P +QGGP  + IAA A+  K+   P
Sbjct:   99 ANMAVYFAVLEPGDTVLGMDLSHGGHLTHG------SPVNFSGKLFNFVSYGVDKETEMIDYENVRKLAIENKPKLIVAGASAYARILDFPKFREIADEVGALLMVDMAHIAGLVAAGVHPSPVPYSDFVTTTTHKTL-------------RGPR-GGLIL-----CKE-KYAQILNKNIFPGIQGGPLEHIIAAKAVCFKEALDP 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUO2 (Serine hydroxymethyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.521e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARPARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_TRIEI (Serine hydroxymethyltransferase OS=Trichodesmium erythraeum (strain IMS101) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 79/206 (38.35%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD IMG+D   GGHL+HG        V+ +  +F++  Y VN +T  IDY+++ E A  ++PK+LICG S+Y +  ++ +FR IAD+ GA L+ D+AHI+GL+A     +P  +CD+VT+TTHK+L             + PR  G+ L       + +  ++++ +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANLAVFLTLLKPGDTIMGMDLSHGGHLTHG------SPVNISGKWFKAHHYGVNKETEAIDYDQVLELAKKHKPKLLICGYSAYSQIINFEKFRAIADEVGAYLLADIAHIAGLVATGHHPNPVPHCDVVTTTTHKTL-------------RGPR-GGLILTR-----DSELGKKLDKSVFPGTQGGPLEHVIAAKAVAFGEALKP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THEYD (Serine hydroxymethyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/202 (39.60%), Postives = 111/202 (54.95%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN AVY  +L PGD IMG+    GGHLSHG        V+     +++  Y VN +TGYID +++   A +++PKI+I G S+YPR  D+  F +IA + GA LM D+AHI+GLIA     SP  Y D +T+TTHK+L             + PR        G       + + I+  V P +QGGP  + IAA A+A K+
Sbjct:   99 ANMAVYFAMLQPGDTIMGMSLTHGGHLSHG------SPVNFTGKLYKTVFYGVNKETGYIDMDEVRRLAQEHKPKIIITGASAYPRTIDFKAFSEIAKEVGAYLMADIAHIAGLIATSMHPSPVPYSDFITTTTHKTL-------------RGPR-------GGVVMCKAQYAKAIDKTVFPGIQGGPLVHVIAAKAVAFKE 274          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA2_BURPS1.165e-3139.02Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA2_BURP11.165e-3139.02Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA_THELT1.521e-3138.61Serine hydroxymethyltransferase OS=Thermotoga lett... [more]
GLYA_SHEHH1.521e-3137.86Serine hydroxymethyltransferase OS=Shewanella hali... [more]
GLYA_NITEC1.521e-3139.32Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_GEOKA1.521e-3140.00Serine hydroxymethyltransferase OS=Geobacillus kau... [more]
GLYA_CLOB81.521e-3138.83Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_BRUO21.521e-3139.02Serine hydroxymethyltransferase OS=Brucella ovis (... [more]
GLYA_TRIEI1.987e-3138.35Serine hydroxymethyltransferase OS=Trichodesmium e... [more]
GLYA_THEYD1.987e-3139.60Serine hydroxymethyltransferase OS=Thermodesulfovi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
back to top