CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP7 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 78/206 (37.86%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+ + ++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV PS QGGP  + IAA A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIIPYGID-ESGKIDYDDMAKQAQEHKPKMIIGGFSAYSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPSAQGGPLMHVIAAKAVALKEAMEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP3 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 78/206 (37.86%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+ + ++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV PS QGGP  + IAA A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIIPYGID-ESGKIDYDDMAKQAQEHKPKMIIGGFSAYSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPSAQGGPLMHVIAAKAVALKEAMEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_FRAP2 (Serine hydroxymethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 78/206 (37.86%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G+D  +GGHL+HG       KV+ +   + S  Y ++ ++G IDY+++ E A +++PK++I G S++    D+ +FR+IAD   AVLM D+AH++GL+AA    +PF Y D+ T+TTHK+L             + PR   I  N      N D  ++   A+ P +QGGP  + IAA A+A K+   P
Sbjct:  102 ANAAVYNAVLKPGDTVLGMDLGAGGHLTHG------SKVNFSGKIYNSIQYGLS-ESGDIDYKQVAELAKEHKPKMIIAGFSAFSGIIDWKKFREIADSVDAVLMADIAHVAGLVAAGLYPNPFPYVDVATTTTHKTL-------------RGPRGGLILCN-----DNPDLAKKFQSAIFPGIQGGPLMHVIAAKAVAFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESOH (Serine hydroxymethyltransferase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 83/205 (40.49%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY  LL PGD  +G+D   GGHL+HG        VS +   F+   Y V  +TG IDY+++ + A  +RPK++I G S+YPR  D+ +F QIA    A L+ DMAHI+GL+AA    SP  + D+VTSTTHK+L             + PR  G+ L+     +  DF + +N  + P +QGGP  + IAA A+A  +  T
Sbjct:   99 ANMAVYFALLSPGDTGLGMDLAHGGHLTHG------SPVSFSGRLFDFKHYGVKKETGTIDYDQVADLAKTHRPKMIIAGASAYPRTLDFEKFAQIAASVEACLVVDMAHIAGLVAAGVHPSPVPHADVVTSTTHKTL-------------RGPR-GGLILS-----ARADFGKALNKEIFPGIQGGPLMHVIAAKAVAFGEALT 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_COREF (Serine hydroxymethyltransferase OS=Corynebacterium efficiens GN=glyA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 81/205 (39.51%), Postives = 114/205 (55.61%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD+IMGL    GGHL+HG       K++ +   +E   Y V+P T  +D +++ E+A+  +PK++I G S+YPR  D+  FR+IAD+ GA L  DMAH +GL+AA    SP  Y D+V+ST HK+L                 + GI L      +  D+ +++N +V P  QGGP  + IAA A ALK   T
Sbjct:  108 ANAAVLMTLADPGDKIMGLSLAHGGHLTHGM------KLNFSGKLYEVAAYGVDPDTMLVDMDQVREQAIKEQPKVIIAGWSAYPRHLDFAAFREIADEVGATLWVDMAHFAGLVAAGLHPSPVPYADVVSSTVHKTLGGP--------------RSGIIL------AKQDYAKKLNSSVFPGQQGGPLMHAIAAKATALKIAGT 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSI (Serine hydroxymethyltransferase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUME (Serine hydroxymethyltransferase OS=Brucella melitensis GN=glyA PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGACLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUMB (Serine hydroxymethyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUAB (Serine hydroxymethyltransferase OS=Brucella abortus GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA2 (Serine hydroxymethyltransferase OS=Brucella abortus (strain 2308) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_KLEP71.987e-3137.86Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_KLEP31.987e-3137.86Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_FRAP21.987e-3137.86Serine hydroxymethyltransferase OS=Francisella phi... [more]
GLYA_DESOH1.987e-3140.49Serine hydroxymethyltransferase OS=Desulfococcus o... [more]
GLYA_COREF1.987e-3139.51Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_BRUSI1.987e-3139.02Serine hydroxymethyltransferase OS=Brucella suis (... [more]
GLYA_BRUME1.987e-3139.02Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUMB1.987e-3139.02Serine hydroxymethyltransferase OS=Brucella melite... [more]
GLYA_BRUAB1.987e-3139.02Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA_BRUA21.987e-3139.02Serine hydroxymethyltransferase OS=Brucella abortu... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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