CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA1 (Serine hydroxymethyltransferase OS=Brucella abortus (strain S19) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_BURMA (Serine hydroxymethyltransferase 2 OS=Burkholderia mallei GN=glyA2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31
Identity = 79/205 (38.54%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD ++G+   +GGHL+HG       K + +  +F +  Y V+  T  +DY+++E  A  ++P ++I G S+YPR+ D+ RFR IAD  GA LM DMAHI+G+IAA   A+P ++  +VTSTTHK+L             + PR   +  N      + +  ++IN AV P LQGGP  + IA  A+A  +  T
Sbjct:  105 ANGAVMLALAKPGDTVLGMSLDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLLDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL-------------RGPRGGFVLTN------DEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALT 284          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STACT (Serine hydroxymethyltransferase OS=Staphylococcus carnosus (strain TM300) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY   L  GD ++G++   GGHL+HG        V+ +  F+    Y V+ +T  IDYE++   A + +PK+++ G S+YPRE D+ +F++IAD+ GA LM DMAHI+GL+AA    +P DY D VT+TTHK+L             + PR        G   +  ++ ++I+  + P +QGGP  + IAA A+A  +   P
Sbjct:   97 ANMAVYLVALDHGDTVLGMNLSHGGHLTHG------SPVNFSGKFYNFVEYGVDKETERIDYEEVRRLAKENKPKLIVAGASAYPREIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHQNPVDYADFVTTTTHKTL-------------RGPR-------GGMILTKEEYAKQIDKTIFPGIQGGPLEHVIAAKAVAFGEALNP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHESH (Serine hydroxymethyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL  GD ++G+    GGHL+HG H      VS +   + +  Y ++  TG IDY ++E  A++++PK++I G S+Y    D+G+FR+IADK GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L+    C +    +++N AV P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANSAVFMALLQGGDTVLGMSLAHGGHLTHGSH------VSFSGKLYNAVQYGIDEATGKIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPLPHAHVVTTTTHKTLAGP--------------RGGLILS---ACDDEAIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALEP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPA (Serine hydroxymethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL  GD ++G+    GGHL+HG H      VS +   + +  Y ++  TG IDY ++E  A++++PK++I G S+Y    D+G+FR+IADK GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L+     ++ D  +++N AV P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANAAVFMALLQGGDTVLGMSLAHGGHLTHGSH------VSFSGKLYNAVQYGIDETTGQIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPMPHAHVVTTTTHKTLAGP--------------RGGLILS---SINDEDIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALDP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PSYWF (Serine hydroxymethyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 78/202 (38.61%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN AV+  LL  GD ++G+   +GGHL+HG H      V+ + I + +  Y +  +TG IDY+++E  A +++PK++I G S+Y +  D+ RFR IAD  GA L  DMAH++GL+AA    SP  + D+VT+TTHK+L             + PR  G+ L+  D        +++N AV P  QGGP  + IAA A+  K+
Sbjct:  100 ANSAVFLALLEAGDTVLGMSLDAGGHLTHGAH------VNFSGINYNAVQYGLVEETGLIDYDEVERLAQEHKPKMIIAGFSAYSQVVDWQRFRDIADSVGAYLFVDMAHVAGLVAAGVYPSPVPFADVVTTTTHKTL-------------RGPR-SGLILSRDD-----KLAKKLNSAVFPGNQGGPLMHAIAAKAVCFKE 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMS (Serine hydroxymethyltransferase OS=Mycoplasma mycoides subsp. mycoides SC GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 75/205 (36.59%), Postives = 118/205 (57.56%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN A Y  LL P DR++ +   +GGHL+HGY       ++ +   ++   Y VN  T  +DY+++E+  ++++PK+++ G S+Y R  D+ +F++IADK GA LM DMAHI+GL+AA    +P +Y DIVT+TTHK+L              +  + G+ L         +F ++++ AV P  QGGP  N IA    AL + +T
Sbjct:   95 ANDAAYKALLEPKDRVVAMSLDAGGHLTHGY------PINFSGYTYDFRFYGVNKDTEQLDYQEIEKIVLEHKPKLIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGVHPNPLEYADIVTTTTHKTL--------------RGARGGLIL------CKQEFAKKVDLAVFPGSQGGPLENLIAGKTQALLEAST 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 77/206 (37.38%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G++   GGHL+HG        V+ + +++    Y V+  T  IDY+ + + A+++RPK+++ G S+YPR+ D+ R R+IAD+ G+  M DMAHI+GL+AA    +P  Y   VT+TTHK+L             + PR  G+ L     C   +F + I+ A+ P +QGGP  + IAA A+A  +   P
Sbjct:  101 ANTAVYFAMLKPGDTVLGMNLSHGGHLTHG------SPVNISGMYYNFVAYGVDQATERIDYDVVRQLALEHRPKLIVAGASAYPRQIDFARLREIADEAGSYFMVDMAHIAGLVAAGLHQNPVPYAHFVTTTTHKTL-------------RGPR-GGLIL-----CQE-EFAKAIDKAIFPGIQGGPLMHVIAAKAVAFGEALKP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DEHE1 (Serine hydroxymethyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=glyA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  ++ PGD IMGL    GGHL+HG       K +     +    Y +N +T  IDY+ LE+ A+++RP++++ G S+YPR  D+ RFR I DK  A LM D+AHI+GL+AA    SP  Y D+VTST+HK+L             + PR        G       + + I+ AV P +QGGP    +AA A+A ++   P
Sbjct:   97 ANMAAYFAMVKPGDTIMGLTLSHGGHLTHG------SKANFTGKLYHVIEYGLNAETERIDYDNLEKLALEHRPRLIVTGASAYPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTL-------------RGPR-------GGFILCKEQYAKAIDQAVFPVIQGGPLMQVVAAKAVAFQEAMQP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLAMS (Serine hydroxymethyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=glyA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31
Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   +  PGD I+GL+   GGHL+HG       K++ +   +++  Y V+P T  ID + + EKA+++RP+++I G S+YPR  D+  FR IAD+ GA L  DMAH +GL+AA    SP  Y D+V+ST HK+L                 + G+ L+     +     +++N AV P  QGGP  + IAA A A K  AT
Sbjct:  104 ANAAVLAAIAQPGDTILGLELAHGGHLTHGM------KLNFSGKLYDAAAYGVDPDTFLIDMDVVREKALEHRPQVIIAGWSAYPRHLDFAAFRSIADEVGAKLWVDMAHFAGLVAAGVHPSPVPYADVVSSTVHKTLAGP--------------RSGVILSRDTALA-----KKLNSAVFPGQQGGPLMHVIAAKATAFKIAAT 283          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BRUA11.987e-3139.02Serine hydroxymethyltransferase OS=Brucella abortu... [more]
GLYA2_BURMA1.987e-3138.54Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA_STACT2.595e-3137.38Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_SHESH2.595e-3137.38Serine hydroxymethyltransferase OS=Shewanella sedi... [more]
GLYA_SHEPA2.595e-3137.38Serine hydroxymethyltransferase OS=Shewanella peal... [more]
GLYA_PSYWF2.595e-3138.61Serine hydroxymethyltransferase OS=Psychrobacter s... [more]
GLYA_MYCMS2.595e-3136.59Serine hydroxymethyltransferase OS=Mycoplasma myco... [more]
GLYA_DESHY2.595e-3137.38Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_DEHE12.595e-3138.35Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_CLAMS2.595e-3138.54Serine hydroxymethyltransferase OS=Clavibacter mic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
back to top