CX309079
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUA1 (Serine hydroxymethyltransferase OS=Brucella abortus (strain S19) GN=glyA PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31 Identity = 80/205 (39.02%), Postives = 112/205 (54.63%), Query Frame = 2 Query: 5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 N AV+ LL PGD MGLD SGGHL+HG V+ + +F Y V +D +++ A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A + SP + + T+TTHKSL + PR I N + D ++IN AV P LQGGP + IA A+A + P Sbjct: 114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 293
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_BURMA (Serine hydroxymethyltransferase 2 OS=Burkholderia mallei GN=glyA2 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.987e-31 Identity = 79/205 (38.54%), Postives = 116/205 (56.59%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 AN AV L PGD ++G+ +GGHL+HG K + + +F + Y V+ T +DY+++E A ++P ++I G S+YPR+ D+ RFR IAD GA LM DMAHI+G+IAA A+P ++ +VTSTTHK+L + PR + N + + ++IN AV P LQGGP + IA A+A + T Sbjct: 105 ANGAVMLALAKPGDTVLGMSLDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLLDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTL-------------RGPRGGFVLTN------DEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALT 284
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STACT (Serine hydroxymethyltransferase OS=Staphylococcus carnosus (strain TM300) GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY L GD ++G++ GGHL+HG V+ + F+ Y V+ +T IDYE++ A + +PK+++ G S+YPRE D+ +F++IAD+ GA LM DMAHI+GL+AA +P DY D VT+TTHK+L + PR G + ++ ++I+ + P +QGGP + IAA A+A + P Sbjct: 97 ANMAVYLVALDHGDTVLGMNLSHGGHLTHG------SPVNFSGKFYNFVEYGVDKETERIDYEEVRRLAKENKPKLIVAGASAYPREIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHQNPVDYADFVTTTTHKTL-------------RGPR-------GGMILTKEEYAKQIDKTIFPGIQGGPLEHVIAAKAVAFGEALNP 276
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHESH (Serine hydroxymethyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV+ LL GD ++G+ GGHL+HG H VS + + + Y ++ TG IDY ++E A++++PK++I G S+Y D+G+FR+IADK GA L DMAH++GL+AA +P + +VT+TTHK+L + G+ L+ C + +++N AV P QGGP + IAA A+A K+ P Sbjct: 101 ANSAVFMALLQGGDTVLGMSLAHGGHLTHGSH------VSFSGKLYNAVQYGIDEATGKIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPLPHAHVVTTTTHKTLAGP--------------RGGLILS---ACDDEAIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALEP 283
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHEPA (Serine hydroxymethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV+ LL GD ++G+ GGHL+HG H VS + + + Y ++ TG IDY ++E A++++PK++I G S+Y D+G+FR+IADK GA L DMAH++GL+AA +P + +VT+TTHK+L + G+ L+ ++ D +++N AV P QGGP + IAA A+A K+ P Sbjct: 101 ANAAVFMALLQGGDTVLGMSLAHGGHLTHGSH------VSFSGKLYNAVQYGIDETTGQIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPMPHAHVVTTTTHKTLAGP--------------RGGLILS---SINDEDIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALDP 283
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PSYWF (Serine hydroxymethyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 78/202 (38.61%), Postives = 117/202 (57.92%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607 AN AV+ LL GD ++G+ +GGHL+HG H V+ + I + + Y + +TG IDY+++E A +++PK++I G S+Y + D+ RFR IAD GA L DMAH++GL+AA SP + D+VT+TTHK+L + PR G+ L+ D +++N AV P QGGP + IAA A+ K+ Sbjct: 100 ANSAVFLALLEAGDTVLGMSLDAGGHLTHGAH------VNFSGINYNAVQYGLVEETGLIDYDEVERLAQEHKPKMIIAGFSAYSQVVDWQRFRDIADSVGAYLFVDMAHVAGLVAAGVYPSPVPFADVVTTTTHKTL-------------RGPR-SGLILSRDD-----KLAKKLNSAVFPGNQGGPLMHAIAAKAVCFKE 276
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMS (Serine hydroxymethyltransferase OS=Mycoplasma mycoides subsp. mycoides SC GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 75/205 (36.59%), Postives = 118/205 (57.56%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 AN A Y LL P DR++ + +GGHL+HGY ++ + ++ Y VN T +DY+++E+ ++++PK+++ G S+Y R D+ +F++IADK GA LM DMAHI+GL+AA +P +Y DIVT+TTHK+L + + G+ L +F ++++ AV P QGGP N IA AL + +T Sbjct: 95 ANDAAYKALLEPKDRVVAMSLDAGGHLTHGY------PINFSGYTYDFRFYGVNKDTEQLDYQEIEKIVLEHKPKLIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGVHPNPLEYADIVTTTTHKTL--------------RGARGGLIL------CKQEFAKKVDLAVFPGSQGGPLENLIAGKTQALLEAST 273
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 77/206 (37.38%), Postives = 119/206 (57.77%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY +L PGD ++G++ GGHL+HG V+ + +++ Y V+ T IDY+ + + A+++RPK+++ G S+YPR+ D+ R R+IAD+ G+ M DMAHI+GL+AA +P Y VT+TTHK+L + PR G+ L C +F + I+ A+ P +QGGP + IAA A+A + P Sbjct: 101 ANTAVYFAMLKPGDTVLGMNLSHGGHLTHG------SPVNISGMYYNFVAYGVDQATERIDYDVVRQLALEHRPKLIVAGASAYPRQIDFARLREIADEAGSYFMVDMAHIAGLVAAGLHQNPVPYAHFVTTTTHKTL-------------RGPR-GGLIL-----CQE-EFAKAIDKAIFPGIQGGPLMHVIAAKAVAFGEALKP 280
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DEHE1 (Serine hydroxymethyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=glyA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 79/206 (38.35%), Postives = 112/206 (54.37%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN A Y ++ PGD IMGL GGHL+HG K + + Y +N +T IDY+ LE+ A+++RP++++ G S+YPR D+ RFR I DK A LM D+AHI+GL+AA SP Y D+VTST+HK+L + PR G + + I+ AV P +QGGP +AA A+A ++ P Sbjct: 97 ANMAAYFAMVKPGDTIMGLTLSHGGHLTHG------SKANFTGKLYHVIEYGLNAETERIDYDNLEKLALEHRPRLIVTGASAYPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTL-------------RGPR-------GGFILCKEQYAKAIDQAVFPVIQGGPLMQVVAAKAVAFQEAMQP 276
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLAMS (Serine hydroxymethyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=glyA PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 2.595e-31 Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 AN AV + PGD I+GL+ GGHL+HG K++ + +++ Y V+P T ID + + EKA+++RP+++I G S+YPR D+ FR IAD+ GA L DMAH +GL+AA SP Y D+V+ST HK+L + G+ L+ + +++N AV P QGGP + IAA A A K AT Sbjct: 104 ANAAVLAAIAQPGDTILGLELAHGGHLTHGM------KLNFSGKLYDAAAYGVDPDTFLIDMDVVREKALEHRPQVIIAGWSAYPRHLDFAAFRSIADEVGAKLWVDMAHFAGLVAAGVHPSPVPYADVVSSTVHKTLAGP--------------RSGVILSRDTALA-----KKLNSAVFPGQQGGPLMHVIAAKATAFKIAAT 283 The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bpback to top |