CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPZ (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVSYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_OCHA4 (Serine hydroxymethyltransferase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 80/205 (39.02%), Postives = 111/205 (54.15%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A     SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +   P
Sbjct:  115 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRVWDWKRFREIADEVGAYLMVDMAHIAGLVAGGVHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAEALKP 294          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NATTJ (Serine hydroxymethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 77/202 (38.12%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN  VY   L PGD ++G+    GGHL+HG        V+ +  +F    Y +   TG ID++K+ E A +++PK+++ G S+YPR  D+  FR+IAD+ GA LM DMAHI+GL+AA    +P  Y D VT+TTHK+L             + PR  G+ L     C   ++++ I+ A+ P LQGGP  + IA+ A++ ++
Sbjct:   97 ANMGVYLAALKPGDTVLGMSLDHGGHLTHG------SPVNISGKYFNFHHYGILEDTGKIDFDKVRELAKEHKPKMIVAGASAYPRIIDFATFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTL-------------RGPR-GGVVL-----CKE-EYKKEIDKAMFPGLQGGPLMHVIASKAVSFQE 272          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCCT (Serine hydroxymethyltransferase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 75/205 (36.59%), Postives = 118/205 (57.56%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN A Y  LL P DR++ +   +GGHL+HGY       ++ +   ++   Y VN  T  +DY+++E+  ++++PK+++ G S+Y R  D+ +F++IADK GA LM DMAHI+GL+AA    +P +Y DIVT+TTHK+L              +  + G+ L         +F ++++ AV P  QGGP  N IA    AL + +T
Sbjct:   95 ANDAAYKALLEPKDRVVAMGLDAGGHLTHGY------PINFSGYTYDFRFYGVNKDTEQLDYQEIEQIVLEHKPKLIVAGASAYSRIIDFKKFKEIADKVGAYLMVDMAHIAGLVAAGVHPNPMEYADIVTTTTHKTL--------------RGARGGLIL------CKQEFAKKVDSAVFPGSQGGPLENLIAGKTQALLEAST 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LEUMM (Serine hydroxymethyltransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   L PGD+I+G+   +GGHL+HG       KVS +   +ES  Y +N +T  +DYE + ++A + +P++++ G S+Y R  ++ +FR IAD+ GA LM DMAHI+GL+AA    +P    D+VTSTTHK+L             + PR  G+ L      S   + +++N A+ P  QGGP  + IA  AIA  +   P
Sbjct:   96 ANAAAYMAFLKPGDKILGMSLDAGGHLTHG------AKVSFSGKVYESHTYGLNSETETLDYEAIAKQAREVKPQMIVAGASAYSRIIEFDKFRAIADEVGAYLMVDMAHIAGLVAAGLHPNPVGIADVVTSTTHKTL-------------RGPR-GGVIL------SQEKYAKQLNSAIFPGSQGGPLEHIIAGKAIAFGEALQP 275          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_AZOPC (Serine hydroxymethyltransferase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=glyA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 85/216 (39.35%), Postives = 116/216 (53.70%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYD----------FEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+   L PGD  +GL    GGHLSHG        V+ + + +++  Y    + G I+Y++LE  AM+  PK++I G S+Y R+WDY R R IADK GA+ M DMAH +GLIAA+ L +P  Y  IVTSTTHK+L             + PR  GI L   D  + +             E ++ A+ P +QGGP  + IAA AIA  +   P
Sbjct:   93 ANMTVFLACLQPGDYFLGLGLSHGGHLSHG------SPVNFSGLSYKALEYGTEKENGKINYQQLEYVAMEKIPKLIIAGASAYSRDWDYQRIRLIADKIGAIFMVDMAHPAGLIAAQLLDNPLHYAHIVTSTTHKTL-------------RGPR-GGIILMGKDFENPWGRTTTKGKIKMMSEILDSALFPGVQGGPLEHIIAAKAIAFYEALQP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCTU (Serine hydroxymethyltransferase 1 OS=Mycobacterium tuberculosis GN=glyA1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   L+ PG+R++GLD  +GGHL+HG       +++ +   +E+  Y V+P T  ID + +   A+++RPK++I G S+YPR  D+  FR IAD+ GA L+ DMAH +GL+AA    SP  + D+V++T HK+L                 + G+ +          + + IN AV P  QGGP  + IA  A+ALK  ATP
Sbjct:   98 ANAAVLHALMSPGERLLGLDLANGGHLTHGM------RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGG--------------RSGLIV------GKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCBO (Serine hydroxymethyltransferase 1 OS=Mycobacterium bovis GN=glyA1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   L+ PG+R++GLD  +GGHL+HG       +++ +   +E+  Y V+P T  ID + +   A+++RPK++I G S+YPR  D+  FR IAD+ GA L+ DMAH +GL+AA    SP  + D+V++T HK+L                 + G+ +          + + IN AV P  QGGP  + IA  A+ALK  ATP
Sbjct:   98 ANAAVLHALMSPGERLLGLDLANGGHLTHGM------RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGG--------------RSGLIV------GKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_ERWCT (Serine hydroxymethyltransferase 1 OS=Erwinia carotovora subsp. atroseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.426e-31
Identity = 81/206 (39.32%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD I+G++   GGHL+HG        V+ +   ++  PY ++ ++G IDY+++ E A  ++PK+++ G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  IVT+TTHK+L               PR   I    GD     D  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTILGMNLAHGGHLTHG------SPVNLSGKLYKVIPYGID-ESGKIDYDEMAELARTHQPKMIVGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAADVYPNPVPHAHIVTTTTHKTLAG-------------PRGGLILAKGGD----EDLYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFT (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG +      V+ +   F +  Y VN Q G IDYE +E  A+++RPK+++ G S+Y ++ D+ RFR IAD+ GA L+ DMAH++GL+AA    SP  +  +VTSTTHK+L             + PR   I              +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYFALLQPGDTILGMSLAHGGHLTHGAN------VNVSGKLFNAVQYGVNAQ-GLIDYEAVESLALEHRPKMVVAGFSAYSQKIDWARFRAIADQVGAYLLVDMAHVAGLVAAGVYPSPLPHAHVVTSTTHKTL-------------RGPRGGIIVAQ----APQEALVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_STRPZ4.426e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_OCHA44.426e-3139.02Serine hydroxymethyltransferase OS=Ochrobactrum an... [more]
GLYA_NATTJ4.426e-3138.12Serine hydroxymethyltransferase OS=Natranaerobius ... [more]
GLYA_MYCCT4.426e-3136.59Serine hydroxymethyltransferase OS=Mycoplasma capr... [more]
GLYA_LEUMM4.426e-3138.35Serine hydroxymethyltransferase OS=Leuconostoc mes... [more]
GLYA_AZOPC4.426e-3139.35Serine hydroxymethyltransferase OS=Azobacteroides ... [more]
GLYA1_MYCTU4.426e-3137.86Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA1_MYCBO4.426e-3137.86Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA1_ERWCT4.426e-3139.32Serine hydroxymethyltransferase 1 OS=Erwinia carot... [more]
GLYA_XYLFT5.780e-3139.32Serine hydroxymethyltransferase OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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