CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XYLF2 (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M23) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG +      V+ +   F +  Y VN Q G IDYE +E  A+++RPK+++ G S+Y ++ D+ RFR IAD+ GA L+ DMAH++GL+AA    SP  +  +VTSTTHK+L             + PR   I              +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYFALLQPGDTILGMSLAHGGHLTHGAN------VNVSGKLFNAVQYGVNAQ-GLIDYEAVESLALEHRPKMVVAGFSAYSQKIDWARFRAIADQVGAYLLVDMAHVAGLVAAGVYPSPLPHAHVVTSTTHKTL-------------RGPRGGIIVAQ----APQEALVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 77/205 (37.56%), Postives = 115/205 (56.10%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY   L  GD I+G++   GGHLSHG         + +  F+   PY V+ +T  IDY ++E+ A+ ++P++++ G S+YPR  D+ +FR IADK GA++M D+AHI+GL+A     SP   C+ VTSTTHK+L             + PR        G       +++ ++  V P +QGGP  + IAA A+A K+  T
Sbjct:   97 ANMAVYFSALSVGDTILGMNLAHGGHLSHG------SPANFSGKFYNVVPYGVDRETETIDYNQVEDLALQHKPRMIVVGASAYPRTIDFEKFRAIADKVGALVMADIAHIAGLVATGLHPSPVPVCEYVTSTTHKTL-------------RGPR-------GGLVMCQASYQKTLSSRVFPGVQGGPLMHIIAAKAVAFKEALT 275
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPM (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M28 GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  103 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVHYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 283
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPC (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  103 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVHYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 283
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPB (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  103 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVHYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 283
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRP8 (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M18 GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRP6 (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M6 GN=glyA PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRP3 (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M3 GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRNIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRP1 (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M1 GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDTDTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALTY (Serine hydroxymethyltransferase OS=Salmonella typhimurium GN=glyA PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XYLF25.780e-3139.32Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_SYNAS5.780e-3137.56Serine hydroxymethyltransferase OS=Syntrophus acid... [more]
GLYA_STRPM5.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRPC5.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRPB5.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRP85.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRP65.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRP35.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRP15.780e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_SALTY5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella typh... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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