CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALTI (Serine hydroxymethyltransferase OS=Salmonella typhi GN=glyA PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALSV (Serine hydroxymethyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALPK (Serine hydroxymethyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALPC (Serine hydroxymethyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALPB (Serine hydroxymethyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALPA (Serine hydroxymethyltransferase OS=Salmonella paratyphi A GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALNS (Serine hydroxymethyltransferase OS=Salmonella newport (strain SL254) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALHS (Serine hydroxymethyltransferase OS=Salmonella heidelberg (strain SL476) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALCH (Serine hydroxymethyltransferase OS=Salmonella choleraesuis GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALA4 (Serine hydroxymethyltransferase OS=Salmonella agona (strain SL483) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++ + A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I    GD     +  +++N AV PS QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTVLGMNLAQGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILAKGGD----EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEP 282
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SALTI5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella typh... [more]
GLYA_SALSV5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella schw... [more]
GLYA_SALPK5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella para... [more]
GLYA_SALPC5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella para... [more]
GLYA_SALPB5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella para... [more]
GLYA_SALPA5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella para... [more]
GLYA_SALNS5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella newp... [more]
GLYA_SALHS5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella heid... [more]
GLYA_SALCH5.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella chol... [more]
GLYA_SALA45.780e-3138.35Serine hydroxymethyltransferase OS=Salmonella agon... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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