CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 84/206 (40.78%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+G+    GGHL+HG       KV+ +   F +  Y +N   G IDY++++  A +++PK++I G S+Y +  D+ R RQIAD  GA L+ DMAHI+GL+AA    SP  + D VTSTTHK+L             + PR  GI L      SN D E++    V P  QGGP  + IA  A+A K+   P
Sbjct:  101 ANAAVFHALLKPGDTILGMSLDHGGHLTHG------AKVNFSGKLFNAVQYGINDD-GQIDYDEIQRLATEHQPKMVIGGFSAYSQVVDWARLRQIADSVGAYLVVDMAHIAGLVAAGVYPSPIPHADAVTSTTHKTL-------------RGPR-GGIILAR----SNPDLEKKFQSLVFPGTQGGPLMHAIAGKAVAFKEALEP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DEIDV (Serine hydroxymethyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 79/206 (38.35%), Postives = 117/206 (56.80%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  L+ PGD ++G+D   GGHL+HG        V+ + + ++   Y+VNP+T  ID   +   A ++RPK++I G S+Y R  D+  FR+IAD+ GA+L  D+AHI+GLIAA E  +   +  +V STTHK+L             + PR  GI L+     ++ +   +I+ AV P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANLAVYNALIEPGDTVLGMDLSHGGHLTHG------NPVNFSGLRYKIVGYQVNPETELIDMNVVRRLAHEHRPKMIIAGASAYSRSIDFAAFREIADEVGAILFADIAHIAGLIAAGEHPNALPHAHVVASTTHKTL-------------RGPR-GGIILS-----NDLELGAKIDRAVFPGYQGGPLEHVIAAKAVAFGEALRP 280
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_MYCTU (Serine hydroxymethyltransferase 2 OS=Mycobacterium tuberculosis GN=glyA2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 113/206 (54.85%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A    LL PGD I+GL    GGHL+HG       +++ +   + +  Y+V+ +   +D + + E A  +RPK++I G S+YPR+ D+ RFR IAD+  AVLM DMAH +GL+AA    SP  +  +VTSTTHK+L                 + GI L     C++    ++IN AV P  QGGP  + IAA A A K  A P
Sbjct:  101 ANAATMHALLNPGDTILGLSLAHGGHLTHGM------RINFSGKLYHATAYEVSKEDYLVDMDAVAEAARTHRPKMIIAGWSAYPRQLDFARFRAIADEVDAVLMVDMAHFAGLVAAGVHPSPVPHAHVVTSTTHKTLGGP--------------RGGIIL-----CNDPAIAKKINSAVFPGQQGGPLEHVIAAKATAFKMAAQP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_MYCBO (Serine hydroxymethyltransferase 2 OS=Mycobacterium bovis GN=glyA2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.780e-31
Identity = 81/206 (39.32%), Postives = 113/206 (54.85%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A    LL PGD I+GL    GGHL+HG       +++ +   + +  Y+V+ +   +D + + E A  +RPK++I G S+YPR+ D+ RFR IAD+  AVLM DMAH +GL+AA    SP  +  +VTSTTHK+L                 + GI L     C++    ++IN AV P  QGGP  + IAA A A K  A P
Sbjct:  101 ANAATMHALLNPGDTILGLSLAHGGHLTHGM------RINFSGKLYHATAYEVSKEDYLVDMDAVAEAARTHRPKMIIAGWSAYPRQLDFARFRAIADEVDAVLMVDMAHFAGLVAAGVHPSPVPHAHVVTSTTHKTLGGP--------------RGGIIL-----CNDPAIAKKINSAVFPGQQGGPLGHVIAAKATAFKMAAQP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPG (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN A+ P LQGGP  + IAA A+A K+   P
Sbjct:  101 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTEMLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAIFPGLQGGPLEHVIAAKAVAFKEALDP 281
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRPF (Serine hydroxymethyltransferase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 81/206 (39.32%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  L+  GD ++G+D  +GGHL+HG        V+ +   +    Y V+  T  ++YE + E+A   +PK+++ G S+Y R  D+ +FR IAD  GA LM DMAHI+GL+AA    SP  Y  IVTSTTHK+L             + PR  G+ L + +  +     ++IN AV P LQGGP  + IAA A+A K+   P
Sbjct:  103 ANAAAYMALIEAGDTVLGMDLAAGGHLTHG------SPVNFSGKTYHFVGYSVDADTETLNYEAILEQAKAVQPKLIVAGASAYSRSIDFEKFRAIADHVGAYLMVDMAHIAGLVAAGVHPSPVPYAHIVTSTTHKTL-------------RGPR-GGLILTNDEALA-----KKINSAVFPGLQGGPLEHVIAAKAVAFKEALDP 283
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHIBS (Serine hydroxymethyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HALHL5.780e-3140.78Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_DEIDV5.780e-3138.35Serine hydroxymethyltransferase OS=Deinococcus des... [more]
GLYA2_MYCTU5.780e-3139.32Serine hydroxymethyltransferase 2 OS=Mycobacterium... [more]
GLYA2_MYCBO5.780e-3139.32Serine hydroxymethyltransferase 2 OS=Mycobacterium... [more]
GLYA_STRPG7.549e-3138.83Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_STRPF7.549e-3139.32Serine hydroxymethyltransferase OS=Streptococcus p... [more]
GLYA_SHISS7.549e-3137.86Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL7.549e-3137.86Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF87.549e-3137.86Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIBS7.549e-3137.86Serine hydroxymethyltransferase OS=Shigella boydii... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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