CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECOHS (Serine hydroxymethyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECODH (Serine hydroxymethyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECOBW (Serine hydroxymethyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO8A (Serine hydroxymethyltransferase OS=Escherichia coli O8 (strain IAI1) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO81 (Serine hydroxymethyltransferase OS=Escherichia coli O81 (strain ED1a) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO7I (Serine hydroxymethyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO5E (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO57 (Serine hydroxymethyltransferase OS=Escherichia coli O157:H7 GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO55 (Serine hydroxymethyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO45 (Serine hydroxymethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ECOHS7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECODH7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOBW7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO8A7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO817.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO7I7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO5E7.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO577.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO557.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO457.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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