CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO27 (Serine hydroxymethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ECO24 (Serine hydroxymethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLAM3 (Serine hydroxymethyltransferase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 79/205 (38.54%), Postives = 113/205 (55.12%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   +  PGD I+GL+   GGHL+HG       K++ +   +++  Y V+P T  ID + + EKA+ +RP+++I G S+YPR  D+  FR IAD+ GA L  DMAH +GL+AA    SP  Y D+V+ST HK+L                 + G+ L+     +     +++N AV P  QGGP  + IAA A A K  AT
Sbjct:  104 ANAAVLAAIAQPGDMILGLELAHGGHLTHGM------KLNFSGKLYDAAAYGVDPDTFLIDMDVVREKALAHRPQVIIAGWSAYPRHLDFAAFRSIADEVGAKLWVDMAHFAGLVAAGVHPSPVPYADVVSSTVHKTLAGP--------------RSGVILSRDTALA-----KKLNSAVFPGQQGGPLMHVIAAKATAFKIAAT 283
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUSU (Serine hydroxymethyltransferase OS=Brucella suis GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 2 
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAE 289
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BRUC2 (Serine hydroxymethyltransferase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.549e-31
Identity = 79/201 (39.30%), Postives = 111/201 (55.22%), Query Frame = 2 
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++   A + +PK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SP  +  + T+TTHKSL             + PR   I  N      + D  ++IN AV P LQGGP  + IA  A+A  +
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRKDDHLLDMDEVARLARENKPKLILAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPVPHAHVCTTTTHKSL-------------RGPRGGMILTN------DADIAKKINSAVFPGLQGGPLMHVIAGKAVAFAE 289
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ZYMMO (Serine hydroxymethyltransferase OS=Zymomonas mobilis GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 78/206 (37.86%), Postives = 115/206 (55.83%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +  PGD IMGL   +GGHL+HG       K + +  +F +  Y V+P+T  IDY+++ + A+  +P+++I GGS+YPR  D+  FR++AD+ GA  M DMAH +GL+A     SP  +  I T+TTHK+L             + PR  G+ L      +     ++IN AV P +QGGP  + IAA A+A  +   P
Sbjct:  106 ANGAVLLAVAKPGDTIMGLSLDAGGHLTHG------AKAAMSGKWFNAVQYAVHPETQLIDYDQVRDLALKNKPRVIIAGGSAYPRHIDFAFFRKVADEVGATFMVDMAHFAGLVAGGVHPSPVPHAHITTTTTHKTL-------------RGPR-GGMILTDDPALA-----KKINSAVFPGMQGGPLMHVIAAKAVAFGEALQP 286
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHESM (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 79/206 (38.35%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++E  A++++PK++I G S+Y    D+ R R+IADK GA L  DMAH++GLIAA    +P  +  +VTSTTHK+L                 + GI L+  D   + D  +++N AV P  QGGP  + IA  A+A K+   P
Sbjct:  101 ANSAVYMALLKPGDTVLGMNLAHGGHLTHG------SPVNFSGRLYNIIPYGID-ESGKIDYDEMERLAVEHKPKMMIGGFSAYSGIVDWARMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGIILSAAD---DEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEP 282
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACCB (Serine hydroxymethyltransferase OS=Lactobacillus casei (strain BL23) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 76/206 (36.89%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   L  GD+++ +D   GGHL+HG        VS +   +  + Y ++P+T  ++Y K+ E+A   +P++++ G S+Y RE D+ +FR+IAD  GA LM DMAHI+GL+AA    +P  Y D+VT+TTHK+L             + PR  G+ L      +   + + IN A+ P +QGGP ++ +AA A+AL +   P
Sbjct:   96 ANMATYRAFLEDGDKVLAMDLTDGGHLTHG------SPVSFSGQEYHFYHYGLDPKTERLNYAKIREQAEQVQPRMIVAGASAYSREIDFKKFREIADHVGAFLMVDMAHIAGLVAAGLHMNPVPYADVVTTTTHKTL-------------RGPR-GGLIL------AKAQYGKAINSALFPGIQGGPLDHVVAAKAVALGEALQP 275
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACC3 (Serine hydroxymethyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 76/206 (36.89%), Postives = 118/206 (57.28%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   L  GD+++ +D   GGHL+HG        VS +   +  + Y ++P+T  ++Y K+ E+A   +P++++ G S+Y RE D+ +FR+IAD  GA LM DMAHI+GL+AA    +P  Y D+VT+TTHK+L             + PR  G+ L      +   + + IN A+ P +QGGP ++ +AA A+AL +   P
Sbjct:   96 ANMATYRAFLEDGDKVLAMDLTDGGHLTHG------SPVSFSGQEYHFYHYGLDPKTERLNYAKIREQAEQVQPRMIVAGASAYSREIDFKKFREIADHVGAFLMVDMAHIAGLVAAGLHMNPVPYADVVTTTTHKTL-------------RGPR-GGLIL------AKAQYGKAINSALFPGIQGGPLDHVVAAKAVALGEALQP 275
[Close]
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ERWT9 (Serine hydroxymethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 80/206 (38.83%), Postives = 114/206 (55.34%), Query Frame = 2 
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD I+G++   GGHL+HG        V+ +   +   PY ++ +TG IDY +L E A +++PK+++ G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  IVT+TTHK+L               PR   I    GD     D  +++N  V P  QGGP  + IA  A+A K+   P
Sbjct:  101 ANFAVYTALLQPGDTILGMNLAHGGHLTHG------SPVNLSGKLYNVIPYGID-ETGKIDYNELAELAKEHQPKMIVGGFSAYSGICDWEKMREIADSIGAYLFVDMAHVAGLVAADVYPNPVPHAHIVTTTTHKTLAG-------------PRGGLILAKGGD----EDLYKKLNSGVFPGSQGGPLMHVIAGKAVAFKEAMEP 282
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ECO277.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECO247.549e-3137.86Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_CLAM37.549e-3138.54Serine hydroxymethyltransferase OS=Clavibacter mic... [more]
GLYA_BRUSU7.549e-3139.30Serine hydroxymethyltransferase OS=Brucella suis G... [more]
GLYA_BRUC27.549e-3139.30Serine hydroxymethyltransferase OS=Brucella canis ... [more]
GLYA_ZYMMO9.859e-3137.86Serine hydroxymethyltransferase OS=Zymomonas mobil... [more]
GLYA_SHESM9.859e-3138.35Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_LACCB9.859e-3136.89Serine hydroxymethyltransferase OS=Lactobacillus c... [more]
GLYA_LACC39.859e-3136.89Serine hydroxymethyltransferase OS=Lactobacillus c... [more]
GLYA_ERWT99.859e-3138.83Serine hydroxymethyltransferase OS=Erwinia tasmani... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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