CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CORDI (Serine hydroxymethyltransferase OS=Corynebacterium diphtheriae GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 80/205 (39.02%), Postives = 110/205 (53.66%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD+IMGL    GGHL+HG H     K+      +E   Y+V P    +D +K+ E+A+  +P++LI G S+YPR  D+  FR IAD+  A L  DMAH +GL+AA    SP  Y D+V++T HK+L               PR        G   S  ++ +++N AV P  QGGP  + I A A+A+K  AT
Sbjct:  103 ANAAVLMALANPGDKIMGLSLAHGGHLTHGMHLNFSGKL------YEVAAYEVEPDNFRLDMDKIREQALKEKPQVLIAGWSAYPRHQDFAAFRSIADEVDAKLWVDMAHFAGLVAAGLHPSPVPYADVVSTTVHKTLGG-------------PRS-------GMILSKQEYAKKLNSAVFPGQQGGPLMHAIVAKAVAMKIAAT 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.859e-31
Identity = 74/202 (36.63%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN  VY  +L PGD +MG++   GGHL+HG        V+ +  +++ + Y ++  +G ID++++ + A + +PK+++ G S+YPRE D+ +FR+IAD+ GA+LM DMAHI+GL+AA    +P +  D VT+TTHK+L             + PR  G+ L     C    + + I+ A+ P +QGGP  + IA+ A+  K+
Sbjct:   98 ANIGVYFAMLKPGDVVMGMNLSQGGHLTHG------APVNISGQYYKFYEYGIDKDSGLIDFDEVRKIAHEVKPKMIVAGASAYPREIDFKKFREIADEVGALLMVDMAHIAGLVAAGLHQNPCEVADFVTTTTHKTL-------------RGPR-GGVIL-----CKE-KYAKDIDKAIFPGIQGGPLEHIIASKAVCFKE 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SERP5 (Serine hydroxymethyltransferase OS=Serratia proteamaculans (strain 568) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 82/206 (39.81%), Postives = 115/206 (55.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT LL PGD I+G++   GGHL+HG        V+ +   +   PY ++ + G IDYE L ++A  ++PK++I G S++    D+ + R+IAD  GA L  DMAH++GLIAA    +P  +  IVT+TTHK+L               PR   I    GD     D  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFAVYTALLQPGDTILGMNLAHGGHLTHG------SPVNLSGKLYNVVPYGID-EKGQIDYEDLAKQAQTHKPKMIIGGFSAFSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHIVTTTTHKTLAG-------------PRGGLILAKGGD----EDLYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD  +GLD   GGHL+HG        V+ + I +E+  Y V  +TG ID  ++ ++A + +PK++  G S+YPR++DY  FR+IAD+ GA L  DMAH +GLIA   L  P  +  +VT+TTHK+L                   K  RK G               E ++ AV P  QGGP  + IAA A+  K+   P
Sbjct:   97 ANSAVYLTLLDPGDTFLGLDLSHGGHLTHG------SPVNFSGILYEAEYYGVEEETGRIDMNRVRDRAKEVQPKMISIGASAYPRDFDYEAFREIADEVGAFLWMDMAHTAGLIAGGVLNDPMPHTHVVTTTTHKTLRGPRGGMILLGDDYENPMGKTARKSG---------RTKMMSELLDSAVFPGTQGGPLMHVIAAKAVGFKEALKP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_MYCS5 (Serine hydroxymethyltransferase OS=Mycoplasma synoviae (strain 53) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A    ++  G +IMGL   SGGHL+HGY      K+S + IF+ S  Y+V  + G +DYE++++ A+  +P ++ICG S+YPR  D+ +FR+IAD CGA LM D+AHI+GLIA     SP  Y  ++TSTTHK+               +  + G+ + + +     +  ++++  V P  QGGP  + IA  AIA  +   P
Sbjct:   98 ANAAAIASVVPNGGKIMGLSLKSGGHLTHGY------KISFSGIFYNSITYEVG-KNGKLDYEEIKKIALAEKPDLIICGYSAYPRLIDFKKFREIADLCGAKLMADVAHIAGLIAGGVHPSPVGYAHVITSTTHKTF--------------RGARGGVIMTNDE-----EIAKKVDRWVFPGYQGGPLFHAIAGKAIAFYEALQP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LACBA (Serine hydroxymethyltransferase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 78/206 (37.86%), Postives = 114/206 (55.34%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY   L PGD I+G+   +GGHL+HG       KV+ +   + S+ Y +NP+T  +DY+ + + A   +P++++ G S+Y R  D+  FR IAD+ GA LM DMAHI+GL+A     SP    D+VT+TTHK+L             + PR  G+ L+  +        ++IN AV P  QGGP  + IA  A A  + + P
Sbjct:   96 ANQAVYAAFLKPGDTILGMGLDAGGHLTHG------AKVNFSGKLYNSYSYALNPETELLDYDMIRDLARKVKPQLIVAGASAYSRTIDWQAFRSIADEVGAYLMVDMAHIAGLVATGLHPSPVGIADVVTTTTHKTL-------------RGPR-GGLILSQAENA------KKINSAVFPGTQGGPLEHVIAGKAAAFFEDSQP 275          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_FRATN (Serine hydroxymethyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 76/206 (36.89%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G+D  +GGHL+HG       KV+ +   + S  Y ++ + G IDYE++ + A +++PK++I G S++    ++ +FR+IAD   AVLM D+AH++GL+AA    +PF Y D+ T+TTHK+L             + PR   I  N     +N +  ++   A+ P +QGGP  + IAA A+A K+   P
Sbjct:  102 ANAAVYNAVLKPGDTVLGMDLGAGGHLTHG------SKVNFSGKIYNSIQYGLD-ENGDIDYEQVAQLAKEHKPKMIIAGFSAFSGIINWQKFREIADSVDAVLMADIAHVAGLVAAGVYPNPFPYVDVATTTTHKTL-------------RGPRGGLILCN-----NNPELAKKFQSAIFPGIQGGPLMHVIAAKAVAFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CORJK (Serine hydroxymethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=glyA PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 77/205 (37.56%), Postives = 114/205 (55.61%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AV   L  PGD+IMGL    GGHL+HG H     K+      +E   Y+V+P+T  +D +K+ E+A+  +P++LI G S+YPR  D+  F+ IAD+ GA L  DMAH +GL+AA    SP  + D+V++T HK+L               PR        G   +  ++ +++N +V P  QGGP  + +AA A+A+K   T
Sbjct:  112 ANAAVLMSLANPGDKIMGLSLAHGGHLTHGMHLNFSGKL------YEVAAYEVDPETFRLDMDKIREQAIAEKPQVLIAGWSAYPRHQDFAAFKSIADEVGAKLWVDMAHFAGLVAADLHPSPVPHADVVSTTVHKTLGG-------------PRS-------GMILAKQEYAKKLNSSVFPGQQGGPLMHAVAAKAVAMKVAQT 290          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   L PGD ++G++   GGHL+HG        V+ +   +    Y V P T  I+YEK+ E A  ++PK+++ G S+YPR  D+   ++IAD+ GA LM DMAHI+GL+AA    SP  Y D+VT+TTHK+L             + PR        G      +   +I+  V P +QGGP  + IAA A+A K+  +P
Sbjct:  101 ANMAAYMAFLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNFVSYGVEPDTEKINYEKVFELAYKHKPKMIVAGASAYPRVIDFKHLKEIADEVGAYLMVDMAHIAGLVAAGLHPSPIPYADVVTTTTHKTL-------------RGPR-------GGVIFCKAEHAAKIDKTVFPGVQGGPLMHVIAAKAVAFKEALSP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_AYWBP (Serine hydroxymethyltransferase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 78/207 (37.68%), Postives = 122/207 (58.94%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFD-YCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+  LL PGD+I+GL    GGHL+HG+      K+S +  F+E+  Y VNPQT  +DY+++ + A+  +PK++I G S+Y +  ++ +FRQIAD+  A L+ D+AHI+GL+A      PF+   D+VTST HK+L             + PR  G+ L + +     +  ++IN  + P +QGGP  + IAA A+A ++   P
Sbjct:  113 ANMGVFQALLKPGDKILGLSLMDGGHLTHGH------KLSFSGGFYEAHFYNVNPQTEMLDYDEIRKVALAVKPKLIIAGYSAYSKTINFKKFRQIADEVNAYLIADIAHIAGLVACGLHPCPFEANADVVTSTMHKTL-------------RGPR-GGLILTNKE-----ELFKKINRGIFPGIQGGPCIHTIAAKAVAFQEAMMP 294          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CORDI9.859e-3139.02Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_CLOD69.859e-3136.63Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_SERP51.288e-3039.81Serine hydroxymethyltransferase OS=Serratia protea... [more]
GLYA_SALRD1.288e-3038.21Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA_MYCS51.288e-3037.38Serine hydroxymethyltransferase OS=Mycoplasma syno... [more]
GLYA_LACBA1.288e-3037.86Serine hydroxymethyltransferase OS=Lactobacillus b... [more]
GLYA_FRATN1.288e-3036.89Serine hydroxymethyltransferase OS=Francisella tul... [more]
GLYA_CORJK1.288e-3037.56Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_CARHZ1.288e-3037.86Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_AYWBP1.288e-3037.68Serine hydroxymethyltransferase OS=Aster yellows w... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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