CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_WOLWR (Serine hydroxymethyltransferase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 86/206 (41.75%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+GL    GGHL+HG         S +  +F+S  Y VN  T  +D +++E+ A++++PK++I G S+YPR+ D+ RFR+IADK GA L+ D+AH +GLIAA E  SP +Y  ++TSTTHK+L             + PR  GI + + +        ++I  AV P LQGGP  + IAA A+A K+   P
Sbjct:  108 ANQAVFASLLTPGDTILGLSLSCGGHLTHG------AAPSLSGKWFKSIQYTVNKDTYLLDMDEIEKLALEHKPKLIIAGASAYPRKMDFKRFREIADKVGAYLLADIAHYAGLIAAGEYPSPAEYAHVMTSTTHKTL-------------RGPR-GGIVMTNDE-----ILHKKIQSAVFPGLQGGPLMHVIAAKAVAFKEALAP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CELJU (Serine hydroxymethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 84/206 (40.78%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  L  PGD ++G+    GGHL+HG       KV+ +   + +  Y +NP+TG +DY+++E  A++++PK+++ G S+Y +  D+ RFR IADK GA LM DMAH++GL+AA    +P    D+ TSTTHK+L             + PR  GI L      +N + E+++N AV P  QGGP  + IAA AI+ K+  TP
Sbjct:  101 ANTAVYAALCAPGDTVLGMSLAHGGHLTHG------AKVNFSGKIYNAVQYGLNPETGLVDYDEVERLALEHKPKMIVAGFSAYSQVLDWQRFRDIADKVGAYLMVDMAHVAGLVAAGLYPNPVQIADVTTSTTHKTL-------------RGPR-GGIIL----AKANEEIEKKLNSAVFPGGQGGPLMHVIAAKAISFKEAMTP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM2 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 83/206 (40.29%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD IMG+D   GGHL+HG        V+ +  +F +  Y VN +T  ++++++ E A++ +PK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A+K   +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANAAVFLSLLKPGDTIMGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPIPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDAEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 83/206 (40.29%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD IMG+D   GGHL+HG        V+ +  +F +  Y VN +T  ++++++ E A++ +PK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A+K   +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANAAVFLSLLKPGDTIMGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPIPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDAEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMHC (Serine hydroxymethyltransferase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY   + PGD+I+G+D  +GGHL+HG       KV+A+  F+ SF Y V    G IDY ++ + A   +PK+++CG S+YPRE D+ +FR+IAD  GA L  D+AHI+GL+ A E  +PF YC +V+STTHK+L             + PR   I  N        +F ++IN ++ P +QGGP  + IA  A+  K   +P
Sbjct:   97 ANQGVYGAFIKPGDKILGMDLSNGGHLTHG------AKVNASGKFYSSFFYGVE-MDGRIDYNRVADIAKIVKPKLIVCGASAYPREIDFAKFREIADSVGAFLFADVAHIAGLVVAGEHTNPFPYCHVVSSTTHKTL-------------RGPRGGIIMTN------EEEFAKKINSSIFPGMQGGPLVHVIAGKAVGFKHNLSP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BACFR (Serine hydroxymethyltransferase OS=Bacteroides fragilis GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 88/212 (41.51%), Postives = 119/212 (56.13%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  +L PGD+ MGL+   GGHLSHG        V+ + I +    Y +  +TG +DY+++EE A+  +PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I +            + ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANAAVFLAVLNPGDKFMGLNLAHGGHLSHG------SLVNTSGIIYTPCEYNLKQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVIMMGKDFPNPWGKKTPKGEIKM----------MSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BACFN (Serine hydroxymethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.018e-35
Identity = 88/212 (41.51%), Postives = 119/212 (56.13%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  +L PGD+ MGL+   GGHLSHG        V+ + I +    Y +  +TG +DY+++EE A+  +PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I +            + ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANAAVFLAVLNPGDKFMGLNLAHGGHLSHG------SLVNTSGIIYTPCEYNLKQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVIMMGKDFPNPWGKKTPKGEIKM----------MSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_WOLPM (Serine hydroxymethyltransferase OS=Wolbachia pipientis wMel GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+GL    GGHL+HG         S +  +F+S  Y VN  T  ++ +++E+ A++++PK++I G S+YPR+ D+ RFR+IADK GA L+ D+AH +GLIAA E  SP +Y  ++TSTTHK+L             + PR  GI + + +        ++I  AV P LQGGP  + IAA A+A K+   P
Sbjct:  108 ANQAVFASLLTPGDTILGLSLSCGGHLTHG------AAPSLSGKWFKSIQYTVNKDTYLLNMDEIEKLALEHKPKLIIAGASAYPRKMDFKRFREIADKVGAYLLADIAHYAGLIAAGEYPSPAEYAHVMTSTTHKTL-------------RGPR-GGIVMTNDEA-----LHKKIQSAVFPGLQGGPLMHVIAAKAVAFKEALAP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THICR (Serine hydroxymethyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 83/206 (40.29%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL PGD ++G+    GGHL+HG H      VS +   + +  Y +NP+TG IDY+++E  A +++PK++I G S+Y +  D+ +FR+IAD  GA LM DMAH++GL+AA E  +P    D+ T+TTHK+L             + PR  G+ L      SN + E+++N A+ P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANAPVYMALLEPGDTVLGMSLAHGGHLTHGSH------VSFSGKMYNAVQYGLNPETGVIDYDEVERLAKEHKPKMIIAGFSAYSQVVDWQKFREIADAVGAYLMVDMAHVAGLVAAGEYPNPVQIADVTTTTTHKTL-------------RGPR-SGLIL----AKSNPEIEKKLNSAIFPGAQGGPLMHVIAAKAVAFKEAMEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROMS (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain AS9601) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 82/206 (39.81%), Postives = 125/206 (60.68%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD IMG+D   GGHL+HG        V+ +  +F +  Y VN +T  ++++++ E A++ +PK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A+K   +P  +CD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A ++   P
Sbjct:  100 ANAAVFLSLLKPGDTIMGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALEKKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPIPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDAEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFREALQP 280          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_WOLWR7.794e-3641.75Serine hydroxymethyltransferase OS=Wolbachia sp. s... [more]
GLYA_CELJU7.794e-3640.78Serine hydroxymethyltransferase OS=Cellvibrio japo... [more]
GLYA_PROM21.018e-3540.29Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM01.018e-3540.29Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_CAMHC1.018e-3540.29Serine hydroxymethyltransferase OS=Campylobacter h... [more]
GLYA_BACFR1.018e-3541.51Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_BACFN1.018e-3541.51Serine hydroxymethyltransferase OS=Bacteroides fra... [more]
GLYA_WOLPM1.329e-3541.26Serine hydroxymethyltransferase OS=Wolbachia pipie... [more]
GLYA_THICR1.329e-3540.29Serine hydroxymethyltransferase OS=Thiomicrospira ... [more]
GLYA_PROMS1.329e-3539.81Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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