CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM9 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 83/206 (40.29%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD IMG+D   GGHL+HG        V+ +  +F +  Y VN +T  ++++++ E A++ +PK++ICG S+YPR  D+  FR IAD+ GA LM D+AHI+GL+A+K   +P  YCD+VT+TTHK+L             + PR  G+ L     C + +F ++ + +V P  QGGP  + IAA A+A  +   P
Sbjct:  100 ANAAVFLSLLQPGDTIMGMDLSHGGHLTHG------SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPLPYCDVVTTTTHKTL-------------RGPR-GGLIL-----CKDGEFGKKFDKSVFPGTQGGPLEHIIAAKAVAFGEALQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPL (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Lens) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 86/206 (41.75%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   LL PGD  MG+  P GGHL+HG       KV+ +   + S  Y V+  TG IDY+ LE+ A+ ++PK++I G S+Y R  D+ RFR+IADK GA LM D+AH++GL+A     SP  Y D+VT+TTHK+L             + PR   I         N + E+++N AV P +QGGP  + IAA A+A  +   P
Sbjct:  101 ANAAVMMALLSPGDTFMGMALPHGGHLTHG------SKVNFSGKLYHSVEYGVDNNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTL-------------RGPRGGLILCK-----ENEEIEKKLNSAVFPGMQGGPLMHVIAAKAVAFAEALLP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THEFY (Serine hydroxymethyltransferase OS=Thermobifida fusca (strain YX) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 84/205 (40.98%), Postives = 121/205 (59.02%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY  LL PGD I+GLD   GGHL+HG       +++ +     +  Y V    G IDY+++E  A +++PK++I G S+YPR+ D+ RFR+IAD+ GA+LM DMAH +GL+AA    +P  Y D+VT+TTHK+L                 + G+ L      +  +  ++IN AV P +QGGP  + IAA A+ALK  A+
Sbjct:  105 ANTAVYFALLQPGDTILGLDLAHGGHLTHGM------RINYSGKILNAVAYHVRESDGLIDYDEVEALAKEHQPKLIIAGWSAYPRQLDFARFREIADQTGALLMVDMAHFAGLVAAGLHPNPVPYADVVTTTTHKTLGGP--------------RGGLIL------AKEELGKKINSAVFPGMQGGPLQHVIAAKAVALKVAAS 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_METBF (Serine hydroxymethyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 87/202 (43.07%), Postives = 119/202 (58.91%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQ 607
            AN AVY  +L PGD IM +D   GGHLSHG        VS +   F   PY V+ +T  +DY +L +KA + +P++++CG S+YPRE D+ +FR+IAD+ GA L+ D+AHI+GL+ A    SP  Y D VTSTTHK+L             + PR  GI ++  +     +   RIN AV P LQGGP  + IA  A+A K+
Sbjct:   97 ANMAVYFSVLKPGDTIMSMDLSHGGHLSHG------SPVSFSGKLFNIVPYGVSKKTEMLDYSELMKKAKENKPQMIVCGASAYPREIDFKQFREIADEVGAYLLADIAHIAGLVVAGVHPSPVPYADFVTSTTHKTL-------------RGPR-GGIIISKTE-----ELATRINKAVFPGLQGGPLMHIIAGKAVAFKE 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELP2 (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain P12) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.736e-35
Identity = 86/206 (41.75%), Postives = 125/206 (60.68%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y VN   GYIDYE++ + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+ A E A PF +C +V+STTHK+L             + PR  G+ L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEVLKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVANEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGLILTNDE-----EIAAKIDKAIFPGTQGGPLMHAIAAKAVGFKENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNP6 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glyA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 83/206 (40.29%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD  +G+D   GGHL+HG        V+ +  +F +  Y VN +T  +DY+ + E A+ +RPK++ICG S+YPR  D+ +FR+IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L       + +  ++++ +V P  QGGP  + IAA A+A  +   P
Sbjct:  102 ANFAVFLTLLQPGDTFLGMDLSHGGHLTHG------SPVNVSGKWFNAGHYGVNRETERLDYDAIRELALQHRPKLIICGYSAYPRTIDFAKFREIADEVGAYLLADMAHIAGLVAAGLHPSPIPHCDVVTTTTHKTL-------------RGPR-GGLILTR-----DAELGKKLDKSVFPGTQGGPLEHVIAAKAVAFGEALRP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNE7 (Serine hydroxymethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 83/206 (40.29%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD  +G+D   GGHL+HG        V+ +  +F +  Y VN +T  +DY+ + E A+ +RPK++ICG S+YPR  D+ +FR+IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L       + +  ++++ +V P  QGGP  + IAA A+A  +   P
Sbjct:  102 ANFAVFLTLLQPGDTFLGMDLSHGGHLTHG------SPVNVSGKWFNAGHYGVNRETERLDYDAIRELALQHRPKLIICGYSAYPRTIDFAKFREIADEVGAYLLADMAHIAGLVAAGLHPSPIPHCDVVTTTTHKTL-------------RGPR-GGLILTR-----DAELGKKLDKSVFPGTQGGPLEHVIAAKAVAFGEALRP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PARD8 (Serine hydroxymethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 84/207 (40.58%), Postives = 120/207 (57.97%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  +L PGD  +GL+   GGHLSHG        V+++ + + +  Y V   TG +DY+++EE A+  +PK+++ GGS+Y R+WDY R R+IADK GA+LM DMAH +GLIAA  L +P +Y  IVTSTTHK+L              + P  +  P       S     + ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANAAVFFAVLNPGDTFLGLNLSHGGHLSHG------SPVNSSGVLYHATEYNVKEDTGRVDYDQMEEVALREKPKLIVGGGSAYSRDWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLNNPLEYAHIVTSTTHKTLRGPRGGIILLGKDFENPWGKKTPKGEIKKMS-----QLLDSAVFPGIQGGPLEHVIAAKAVAFGEALEP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPH (Serine hydroxymethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   LL PGD  MG+  P GGHL+HG       KV+ +   + S  Y V+  TG IDY+ LE+ A+ ++PK++I G S+Y R  D+ RFR+IADK GA LM D+AH++GL+A     SP  Y D+VT+TTHK+L             + PR   I         N + E+++N +V P +QGGP  + IAA A+A  +   P
Sbjct:  101 ANAAVMMALLSPGDTFMGMALPHGGHLTHG------SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTL-------------RGPRGGLILCK-----ENEEIEKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPC (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Corby) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   LL PGD  MG+  P GGHL+HG       KV+ +   + S  Y V+  TG IDY+ LE+ A+ ++PK++I G S+Y R  D+ RFR+IADK GA LM D+AH++GL+A     SP  Y D+VT+TTHK+L             + PR   I         N + E+++N +V P +QGGP  + IAA A+A  +   P
Sbjct:  101 ANAAVMMALLSPGDTFMGMALPHGGHLTHG------SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTL-------------RGPRGGLILCK-----ENEEIEKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLP 282          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROM91.329e-3540.29Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_LEGPL1.329e-3541.75Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_THEFY1.736e-3540.98Serine hydroxymethyltransferase OS=Thermobifida fu... [more]
GLYA_METBF1.736e-3543.07Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_HELP21.736e-3541.75Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_SYNP62.268e-3540.29Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNE72.268e-3540.29Serine hydroxymethyltransferase OS=Synechococcus e... [more]
GLYA_PARD82.268e-3540.58Serine hydroxymethyltransferase OS=Parabacteroides... [more]
GLYA_LEGPH2.268e-3541.26Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_LEGPC2.268e-3541.26Serine hydroxymethyltransferase OS=Legionella pneu... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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