CX309079
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELPY (Serine hydroxymethyltransferase OS=Helicobacter pylori GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 86/206 (41.75%), Postives = 123/206 (59.71%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL P D+I+G+D GGHL+HG KVS ++SF Y VN GYIDYE+ + A +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+ E A PF +C +V+STTHK+L + PR GI L + + + +I+ A+ P QGGP + IAA A+ K+ P Sbjct: 98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGIILTNDE-----EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKP 277
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY +L PGD ++G++ GGHL+HG V+ + F PY V+ +T IDYE+ E A++++PK+++ G S+YPR D+ FR+IADK GAV+M DMAHI+GL+AA SP Y + VT+TTHK+L + PR I D+ + +N + P +QGGP + IAA A+A K+ TP Sbjct: 97 ANMAVYFSVLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTL-------------RGPRGGMIMCRE-------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTP 276
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP4 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 85/206 (41.26%), Postives = 119/206 (57.77%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANFAV+ LL PGD IMG+D GGHL+HG V+ + +F Y V+P T +DYEK+ + A +RPK++ICG S+YPR + +FR IAD+ GA L+ DMAHI+GL+A SP CD+VT+TTHK+L + PR G+ L + + ++++ AV P QGGP + IAA A+A + P Sbjct: 102 ANFAVFLALLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFRVVHYGVDPVTEQLDYEKIRQLAHQHRPKLIICGYSAYPRIIQFDQFRAIADEVGAYLLADMAHIAGLVATGHHPSPIPVCDVVTTTTHKTL-------------RGPR-GGLILTR-----DPELGKKLDKAVFPGNQGGPLEHVIAAKAVAFGEALRP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_AGRVS (Serine hydroxymethyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 84/205 (40.98%), Postives = 114/205 (55.61%), Query Frame = 2 Query: 5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 N AV+ LL PGD MGLD SGGHL+HG V+ + +F Y V +D + + E A ++PK++I GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A + SPF +C + T+TTHKSL + PR I N + D ++ N AV P LQGGP + IAA A+A + P Sbjct: 106 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRQDDNLLDMDAVAESARKHKPKLIIAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGNQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEDLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQP 285
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ACHLI (Serine hydroxymethyltransferase OS=Acholeplasma laidlawii (strain PG-8A) GN=glyA PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGDR++G+D +GGHL+HGY K+S + ++E+ Y V+ IDYE++ + A++ +PK++I G S+YPR D+ +FR+IAD GA L DMAHI+GL+A SP Y D+VTSTTHK+L + PR GI L ++ ++I+ AV P QGGP + IAA A+A K+ P Sbjct: 96 ANAAVYQALLSPGDRVLGMDLNAGGHLTHGY------KLSFSGHYYEAHAYGVSRFDERIDYEEVLKIAIEVKPKMIIAGASAYPRVIDFKKFREIADTVGAYLFVDMAHIAGLVACGLHPSPLPYADVVTSTTHKTL-------------RGPR-GGIILT-----NDASIAKKIDRAVFPGQQGGPLMHIIAAKAVAFKEALDP 276
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34 Identity = 85/205 (41.46%), Postives = 117/205 (57.07%), Query Frame = 2 Query: 5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 N AV+ LL PGD MGLD SGGHL+HG V+ + +F Y V +D +++ KA + +PK++I GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A + SPF +C + T+TTHKSL + PR I N + + ++IN AV P LQGGP + IAA A+AL + P Sbjct: 108 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREDDHLLDMDEVARKAREQKPKLIIAGGTAYSRIWDWKRFREIADEVGAWLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEEIAKKINSAVFPGLQGGPLMHVIAAKAVALGEALQP 287
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34 Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV +L PGDRIMGLD GGHL+HG V+ + F++ Y V+ +TG ID K+EE A+D++P+++ICG S+Y + +D+ FR+IADK GA LM D+AH +GLIAA L P +C VT+TTHK+L + GI + +G E ++ V P +QGGP + IA A+A + P Sbjct: 99 ANMAVLFSVLKPGDRIMGLDLSHGGHLTHG------SSVNFSGQMFDARSYGVDRETGIIDMNKVEEMALDFKPRLIICGASAYSQGFDFKAFREIADKVGAFLMADIAHPAGLIAAGLLTDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE-NPMGITIKTKNGPRVKMMSEVMDAEVMPGIQGGPLMHIIAGKAVAFGEALRP 297
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34 Identity = 84/206 (40.78%), Postives = 114/206 (55.34%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN V +L PGDRIMGLD GGHL+HG KV+ + FE+ Y V+ +TG ID K+EE A++ RPK++ICG S+Y + +D+ FR +ADK GA LM D+AH +GLIAA L P +C VT+TTHK+L + GI + G E I+ + P +QGGP + IAA +A + P Sbjct: 99 ANMGVLFAVLKPGDRIMGLDLSHGGHLTHG------SKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMALEVRPKLIICGASAYSQGFDFKAFRDVADKVGAFLMADIAHPAGLIAAGLLNDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE-NPLGITVKTKKGSRTKMMSEVIDAEIMPGIQGGPLMHIIAAKGVAFGEALQP 297
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34 Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL GD I+G+ GGHL+HG KVS++ + + Y ++ +TG IDY+++E A++ +PK+++ G S+Y + D+ RFRQIADK GA+L DMAH++GL+AA +P Y D+VT+TTHK+L + PR G+ L +N + E+++N AV P QGGP + IA A+ K+ P Sbjct: 101 ANSAVYLALLQAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAVECKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTL-------------RGPR-GGLIL----AKANEEIEKKLNAAVFPGAQGGPLMHVIAGKAVCFKEALEP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_SALTI (Serine hydroxymethyltransferase 2 OS=Salmonella typhi GN=glyA2 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34 Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD+I+G+ GGHL+HG V+ + +F +F Y V+ +G ID +++E A RP+++I GGS+YPR +D+ RFR+IAD GA+L+ DMAH +GL+A SP Y D++T+TTHK+L + PR I N + ++I+ A+ P LQGGP + IAA A+AL + P Sbjct: 100 ANQAVYLALLKPGDKILGMSLQCGGHLTHG------SPVNQSGKWFNAFHYGVDAHSGLIDMDEVETIAKRERPRLIIAGGSAYPRHYDFARFRRIADAVGAMLLVDMAHFAGLVAGGCFPSPLAYADVITATTHKTL-------------RGPRGGMILTN------DARLAKKIDSAIFPGLQGGPLMHVIAAKAVALGEALQP 280 The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bpback to top |