CX309092

Overview
NameCX309092
Unique NameCX309092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1683 contig Ccv1_Contig1683:265..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 4.736e-34
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = -1
Query:    7 FGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLES 318
            FG++ M++KL+PG+SAGTVTA+Y+ S   S  DE+DFEFL N SG PYT+ TNVF +GKGDREQ+ +LWFDP+ DFH Y++ WN  RIVFYVD  PIR +KN E+
Sbjct:   76 FGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEA 180          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.055e-33
Identity = 67/106 (63.21%), Postives = 78/106 (73.58%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +K+VPG+SAGTVTA+ L S  +  DEIDFEFL N +G PY L TNVFT GKGDREQ+ +LWFDPT  +H YSVLWN  +IVF VD  PIR FKNL+  G
Sbjct:   74 FGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELG 179          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.055e-33
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = -1
Query:   10 FGKIDMQLKLVPGNSAGTVTAYYLKS-PGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLE 318
            FG+  +Q+KLV GNSAGTVT++YL S  G   DEID EF+ NLSG+PY ++TNV+ NG G +E QF+LWFDPTADFHTY ++WNPQ I+F VD  P+R FK  +
Sbjct:   73 FGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYD 176          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.800e-33
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFL N +G+PY + TN++ NG G+REQ+ +LWFDPT +FHTYS+LW+ + +VF VD +PIR  KNLE  G
Sbjct:   69 FGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKG 174          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.010e-33
Identity = 65/106 (61.32%), Postives = 79/106 (74.53%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +K+V G+SAGTVTA+YL S  S  DEIDFEFL N +G PY L TNVFT G G+REQ+ +LWFDP+ D+H+YSVLWN  +IVF+VD  PIR FKN +  G
Sbjct:   74 FGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVG 179          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.839e-33
Identity = 66/106 (62.26%), Postives = 78/106 (73.58%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M+LKLV G+SAG VTA+YL S  +  DEIDFEFL N +G PY L TNVFT GKGDREQ+ +LWFDPT  +H+YSVLWN  +IV +VD  PIR FKN +  G
Sbjct:   74 FGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLG 179          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.933e-33
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = -1
Query:    1 GKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 315
            G   M++KL P +SAG VTA+YL S G T DE+DFEFL N  G P  + TNVF+NG+G REQ+F  WFDPT  FHTY +LWNP +IVFYVD  PIR FKN++ +G
Sbjct:   75 GFFQMRIKLPPRDSAGVVTAFYLTSKGDTHDEVDFEFLGNRQGKPIAIQTNVFSNGQGGREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSG 179          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.290e-31
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M+++LV G+SAG VTA+YL S  +  DEIDFEFL N +G PY L TNVFT GKG+REQ+ +LWFDPT  +H+YSVLWN   IV +VD  PIR FKN +  G
Sbjct:   75 FGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLG 180          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.402e-31
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +KL  G++AG VTA+YL S  +  DEIDFEFL N +G P  L TNVFT GKG+REQ+ +LWFDP+  +HTYSVLWN  +IVF+VD  PIR FKN +  G
Sbjct:   76 FGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLG 181          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.402e-31
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +KL  G++AG VTA+YL S  +  DEIDFEFL N +G P  L TNVFT GKG+REQ+ +LWFDP+  +HTYS+LWN  +IVF+VD  PIR FKN +  G
Sbjct:   77 FGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLG 182          
The following BLAST results are available for this feature:
BLAST of CX309092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH7_ARATH4.736e-3461.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN1.055e-3363.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ1.055e-3360.58Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH9_ARATH1.800e-3357.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH5_ARATH4.010e-3361.32Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC6.839e-3362.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH8.933e-3360.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC1.290e-3159.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB6.402e-3158.49Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH6.402e-3157.55Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC21008D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309092 ID=CX309092; Name=CX309092; organism=Citrus clementina; type=EST; length=318bp
GCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGCGAGCCATCAACAT
AGAAGACAATACGTTGGGGATTCCAGAGAACGGAATAGGTGTGAAAGTCA
GCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTCTGTCACCTTTGCC
ATTTGTGAACACATTAGTATGAAGAGTATAAGGATCACCACTTAAATTCT
CCAAGAATTCGAAGTCTATCTCATCCCATGTTGATCCTGGTGATTTTAAG
TAGTAGGCGGTGACTGTGCCGGCAGAATTGCCAGGGACAAGCTTGAGTTG
CATGTCGATTTTGCCAAA
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