CX309092

Overview
NameCX309092
Unique NameCX309092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1683 contig Ccv1_Contig1683:265..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.402e-31
Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG+IDM++KL+ G+S GTV AYY+ S     DEIDFEFL N++G PY L TNV+  G  +RE++ HLWFDP  DFHTYS+LWN  +IVF VD  PIR ++N    G
Sbjct:   79 FGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKG 184          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.419e-30
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = -1
Query:   16 GKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKN 315
            G  +M++K+  GN+ G VTA+YL S G   DEIDFEFL N +G P TL TN+F NG+G+RE++F LWF+PT  +HTY +LWNP +IVFYVD  PIR +KN
Sbjct:   78 GLFEMRIKVPSGNTGGIVTAFYLTSKGGGHDEIDFEFLGNNNGKPVTLQTNLFLNGEGNREERFLLWFNPTKHYHTYGLLWNPYQIVFYVDNIPIRVYKN 177          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.078e-30
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = -1
Query:    1 GKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 315
            G   +++K+ P +++G VTA+YL S G+T DE+DFEFL N  G    + TNVFTNGKG+REQ+  LWFDP+ DFHTY++LWNP +IV YVD  P+R FKN  S G
Sbjct:   82 GFFQIRIKVPPKDTSGVVTAFYLTSKGNTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGNREQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQG 185          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.577e-29
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = -1
Query:   16 FGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKN 318
            FG   M+LKLV G+SAG VTAYY+ S    G   DEIDFEFL N +G PY + TNV+ NG G+RE +  LWFDPT D+HTYS+LWN  ++VF+VD  PIR +KN
Sbjct:   67 FGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGNREMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKN 170          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.094e-22
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = -1
Query:   22 GKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDR-----EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREF 315
            G     +KL PG +AG  T+ YL +    PG   DE+D EFL    G PY+L TNVF  G GDR     E +F LWFDPT DFH Y++LWNP +IVF+VD  PIR +
Sbjct:   80 GYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDH-DEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTY 185          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.438e-22
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = -1
Query:   22 GKIDMQLKLVPGNSAGTVTAYYLKS----PGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGD-----REQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREF 315
            G     +KL PG +AG +T+ YL +    PG   DE+D EFL    G PYTL TNV+  G GD     RE +F LWFDPT DFH Y++LW+P+ I+F VD  PIR +
Sbjct:   84 GYFGANIKLQPGYTAGVITSLYLSNNEAHPGFH-DEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPREIIFLVDDIPIRRY 189          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.094e-22
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = -1
Query:   22 GKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREF 315
            G  ++++K     S G +T++YL S  S  DE+ F+ L   +G PY L+TN++  G+G ++Q+F LWFDPT D+H+YS LWNP ++VFYVD +PIR +
Sbjct:   66 GYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGK-NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY 162          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.521e-21
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = -1
Query:    1 GKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEIDFEFLENLSGDPYTLHTNVFTNGKGD--REQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 315
            G     +KL    SAG V A+YL +        DEIDFEFL N+ G  + + TN++ NG     RE++++LWFDPT DFH YS+LW+   I+FYVD  PIRE K   S G
Sbjct:   74 GFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMG 183          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.523e-19
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = -1
Query:    1 GKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEIDFEFLENLSGDPYTLHTNVFTNGK--GDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 315
            G     +KL    +AG V A+Y+ +        DEIDFEFL N+    + + TN++ NG     RE++++LWFDPT DFH YS+LW+   I+F+VD  PIRE K     G
Sbjct:   74 GFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMG 183          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.621e-19
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -1
Query:   25 GKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEIDFEFLENLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIRE 315
            G     +KL    +AG V A+Y  +      T DE+D EFL N+ G P+   TN++ NG   R  E+++ LWFDP+ +FH YS+LW P +I+F+VD  PIRE
Sbjct:   75 GFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIRE 176          
The following BLAST results are available for this feature:
BLAST of CX309092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH10_ARATH6.402e-3156.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH3_ARATH5.419e-3058.00Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH7.078e-3056.19Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ARATH1.577e-2958.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.094e-2250.47Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH32_ARATH2.438e-2248.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH7.094e-2245.92Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH3.521e-2146.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH2.523e-1941.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH5.621e-1943.14Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC21008D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309092 ID=CX309092; Name=CX309092; organism=Citrus clementina; type=EST; length=318bp
GCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGCGAGCCATCAACAT
AGAAGACAATACGTTGGGGATTCCAGAGAACGGAATAGGTGTGAAAGTCA
GCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTCTGTCACCTTTGCC
ATTTGTGAACACATTAGTATGAAGAGTATAAGGATCACCACTTAAATTCT
CCAAGAATTCGAAGTCTATCTCATCCCATGTTGATCCTGGTGATTTTAAG
TAGTAGGCGGTGACTGTGCCGGCAGAATTGCCAGGGACAAGCTTGAGTTG
CATGTCGATTTTGCCAAA
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