CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.181e-31
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRI+LS EKAIFIFV N+LPPT AMMS IY+EN++EDGFLY+TYSGENTFG
Sbjct:   45 IDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_LACBI (Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.600e-30
Identity = 61/73 (83.56%), Postives = 70/73 (95.89%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKL+PEKAIFIFV  +LPPTAA+MSAIYEE++DED FLY++YSGENTFG
Sbjct:   44 IDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVPADLTVGQFVYV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct:   43 EIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVPADLTVGQFVYV+RKRI L PEKAIFIFV + LPPTAA+MSAIY+E++D+DGFLY+TYSGENTFG
Sbjct:   43 EIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_USTMA (Autophagy-related protein 8 OS=Ustilago maydis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 61/73 (83.56%), Postives = 70/73 (95.89%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKL+PEKAIFIFV  +LP TAA+MSAIYEE++DEDGFLY++YSGENTFG
Sbjct:   44 IDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPATAALMSAIYEEHKDEDGFLYVSYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 60/73 (82.19%), Postives = 68/73 (93.15%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPP  A+MS++YEE +D+DGFLY+TYSGENTFG
Sbjct:   45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFG 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_VANPO (Autophagy-related protein 8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.940e-30
Identity = 59/74 (79.73%), Postives = 70/74 (94.59%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP+DLTVGQFVYV+RKRI L PEKAIFIFV + LPPTAA+MSA+Y+E++D+DGFLY+TYSGENTFG
Sbjct:   43 EIDKRKYLVPSDLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.940e-30
Identity = 60/73 (82.19%), Postives = 70/73 (95.89%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVPADLTVGQFVYV+RKRIKL+PEKAIFIFV +ILPPTAA+MS+IY+E++DEDGFLY+ Y+ ENTFG
Sbjct:   45 IDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.940e-30
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            IDKKKYLVP+DLTVGQFVYV+RKRIKLS EKAIFIFV N+LPPT  +MS++YE+ +DEDGFLY+TYSGENTFG
Sbjct:   46 IDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFG 118          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.310e-29
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            EIDK+KYLVP DLTVGQFVYV+RKRIKL  EKAIFIFV +ILPPTAA++S IYEE++DEDGFLY+ YSGENTFG
Sbjct:   43 EIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ATG8G_ARATH7.181e-3184.93Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
ATG8_LACBI1.600e-3083.56Autophagy-related protein 8 OS=Laccaria bicolor GN... [more]
ATG8_YEAST2.729e-3082.43Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS72.729e-3082.43Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_USTMA2.729e-3083.56Autophagy-related protein 8 OS=Ustilago maydis GN=... [more]
ATG8F_ARATH3.564e-3082.19Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8_VANPO7.940e-3079.73Autophagy-related protein 8 OS=Vanderwaltozyma pol... [more]
ATG8_CRYNE7.940e-3082.19Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8E_ARATH7.940e-3080.82Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8_CANAL2.310e-2981.08Autophagy-related protein 8 OS=Candida albicans GN... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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