CX309122

Overview
NameCX309122
Unique NameCX309122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig768 contig Ccv1_Contig768:786..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.697e-19
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENRDE-DGFLYMTYSGENTFG 224
            E++K+KYLVP ++ VGQF++++R R+ LSP  A+F+FV N LP TA +M ++YE  +DE DGFLY+ YS E TFG
Sbjct:   44 EMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.525e-16
Identity = 39/78 (50.00%), Postives = 60/78 (76.92%), Query Frame = 3
Query:    3 EIDKKKYLVPADLTVGQFVYVVRKRIKLSP---EKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +I+KKK+L P+++ +  F+  +RK +  S    +KAIF+FV KN LPP++ ++S+IY+ ++DEDGFLY+ YSGENTFG
Sbjct:   46 DINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.566e-12
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN-ILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP +LT+ QF+ ++R R+ L   +A ++ V N  L   +A M+ IY + +DEDGF+YMTY+ + TFG
Sbjct:   53 LDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 29/74 (39.19%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++ +   +  ++ IYE+ +DEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 29/74 (39.19%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++ +   +  ++ IYE+ +DEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 29/74 (39.19%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++ +   +  ++ IYE+ +DEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 29/74 (39.19%), Postives = 52/74 (70.27%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV-KNILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + V ++R+R++L+P +A F+ V ++ +   +  ++ IYE+ +DEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + + ++R+R++L+  +A F+ V  + +   +  +S +YE  RDEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFG 224
            +DK K+LVP  + + + + ++R+R++L+  +A F+ V  + +   +  +S +YE  RDEDGFLYM Y+ + TFG
Sbjct:   47 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of CX309122 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 8.254e-11
Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 IDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVK-NILPPTAAMMSAIYEENRDEDGFLYMTYSGENTFGIF*SV 239
            +DK K+LVP  + + + + ++R+R++L+  +A F+ V  + +   +  +S +YE  +DEDGFLYM Y+ + TFG+  SV
Sbjct:   47 LDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKLSV 125          
The following BLAST results are available for this feature:
BLAST of CX309122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
ATG8D_ORYSJ3.697e-1954.67Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8L_DICDI6.525e-1650.00Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN2.566e-1244.59Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT1.663e-1139.19Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE1.663e-1139.19Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN1.663e-1139.19Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.663e-1139.19Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT6.320e-1137.84Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE6.320e-1137.84Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN8.254e-1136.71Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionC21008G09Rv AbsLeaSub1 Citrus clementina cDNA clone C21008G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309122 ID=CX309122; Name=CX309122; organism=Citrus clementina; type=EST; length=435bp
TTGAAATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGC
CAGTTTGTGTATGTGGTGCGAAAGAGGATCAAGCTCAGTCCTGAGAAGGC
TATTTTCATTTTTGTGAAAAACATTCTGCCACCCACTGCGGCAATGATGT
CTGCCATATATGAGGAAAACAGGGATGAAGATGGCTTCCTTTACATGACC
TACAGTGGGGAGAATACATTTGGGATCTTCTGAAGTGTGATCAAGCTACT
ATTATGTGAATAATGCTTCAAGAAGTTAGGTGAAGAAGGGGTTAAGTTGT
AAATAGTTCTATGTTCCATTAGTTTGGAATTTCTTTTAGTTAATGGTATT
ATATGTAACAACCTAAAAGTTGGGATCAGCAACTATTTACATAAAATTCA
ATAGTTTTCTCGAAAAAAAAAAAAAAAAAAAAAAA
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