CX309129

Overview
NameCX309129
Unique NameCX309129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15500 contig Ccv1_Contig15500:283..605. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 2
Query:    8 FVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGV 286
            F ++K SGK  +++ +R+L I W +   YW WS   +SRF+E  +L +  W EI G+I+T  LS  T Y AYL+ K     YG +  P E  +
Sbjct:   84 FKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSI 176          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    8 FVLDKESGKKCFMVRARELYIEWGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGV 286
            F ++K SGK  +++ AR++ I + +  SY  WS + +SRF+E AEL      EIKG+I+T +LS  T Y AYL+ K  +  YG +  P E  V
Sbjct:   86 FKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAELITTDRLEIKGKIQTTVLSPNTKYGAYLIMKVTNGAYGLDLVPAETSV 178          
BLAST of CX309129 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    2 MSFVLDKESGKKCFMVRARELYIE-WGNTPSYWIWSYLPESRFAEVAELKLVWWFEIKGRIETKILSLKTIYAAYLVFKFVDTRYGFERRPIEFGVYFEGRDT 307
            MS  L+K SGK+C M+ A  + +    +    ++W   PESRF  VA L+  + FE   R+ T++LSL+T Y+ Y+VFK  D   GF+   IE  V   G ++
Sbjct:  104 MSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEES 206          
The following BLAST results are available for this feature:
BLAST of CX309129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
P2B15_ARATH2.136e-1338.71F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]
P2B13_ARATH1.808e-1240.86F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]
SKIP3_ARATH1.172e-1137.86F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]

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Properties
Property NameValue
Genbank descriptionC21008H04Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309129 ID=CX309129; Name=CX309129; organism=Citrus clementina; type=EST; length=323bp
TATGAGCTTTGTGCTGGATAAAGAAAGCGGGAAAAAGTGTTTCATGGTTA
GAGCAAGAGAGCTTTATATTGAATGGGGAAATACACCCAGTTATTGGATA
TGGTCTTATCTACCAGAGTCTAGGTTTGCTGAAGTGGCTGAACTCAAGCT
TGTTTGGTGGTTTGAAATTAAAGGAAGGATAGAGACAAAAATTTTGTCCT
TGAAAACTATTTACGCAGCTTACCTTGTGTTCAAGTTTGTCGATACCAGG
TATGGGTTTGAAAGAAGACCTATAGAGTTTGGTGTCTACTTTGAGGGAAG
GGATACTGAGGAAAGGTATAGAG
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