CX309133

Overview
NameCX309133
Unique NameCX309133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:262..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.662e-44
Identity = 84/118 (71.19%), Postives = 104/118 (88.14%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            F+EE+EALV+KSW +MKK++  LGL+FFL+IFEIAPSA+++F FLRDS+VPLE N KLK HA+SVFVMTCE+A QLRKAGK+TVRE+T K+LG  H KYGV + HFEVT+F+LLETIK
Sbjct:   10 FSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIK 127          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.725e-43
Identity = 82/119 (68.91%), Postives = 105/119 (88.24%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            +F+EEQEALV+KSW ++KK++  + L+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++T K+LGA H KYGV + HFEV KF+LL+TIK
Sbjct:   13 SFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIK 131          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.250e-42
Identity = 81/118 (68.64%), Postives = 103/118 (87.29%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA++LFSFLR+S+VPLE+N KLK HAM+VFVMTCE+A QLRK G+VTVR++T K+LG+ HFK GV + HFEV KF+LLETIK
Sbjct:   16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIK 133          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.699e-41
Identity = 79/118 (66.95%), Postives = 101/118 (85.59%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA+ LFSFLR+S+VPLE+N  LK HAM+VFVMTCE+A QLRK G+VTVR++T K+LG+ HFK GV + HFEV +F+LLETIK
Sbjct:   13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIK 130          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL2_ARATH (Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana GN=AHB2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.675e-30
Identity = 64/118 (54.24%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ LFSFLRDS+     N KLK HA+ VF MTCE+A+QLR+ GKV V ++T + LG++H K GV++ HFEV K +LL T+K
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDSDEVPHNNPKLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRTLK 123          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL2_BRANA (Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.857e-30
Identity = 63/118 (53.39%), Postives = 89/118 (75.42%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ +FSFLRD++     N KLK HA+ VF MTCE+A+QLR+ GKV V ++T + LG+VHFK GV++ HFEV K +L+ T+K
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKDMFSFLRDTDEVPHNNPKLKAHAVKVFKMTCETAIQLREKGKVVVADTTLQYLGSVHFKSGVLDPHFEVVKEALVRTLK 123          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL2_SOLLC (Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.191e-29
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  SW  MK++  +L L+FF  I EIAP A+ +FSFL+DS+   E N KL+ HA+ VF MTCESA+QLR+ G+V V E+T K LG++H +  V + HFEV K +LL T+K
Sbjct:    3 FTDKQEALVRDSWEFMKQDIPQLSLRFFSLILEIAPVAKNMFSFLKDSDELPENNPKLRAHAVKVFKMTCESAIQLREKGEVVVGETTLKYLGSIHLQKRVADPHFEVVKEALLRTVK 120          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL2_GOSHI (Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum GN=HB2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.191e-29
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QE LV +SW V+K++     L+FF  I EIAP A+ +FSFLR+S    + N KLK HA+ VF MTCESA+QLR+ G+V V ++T K LG VH K GV + HFEV K +LL TI+
Sbjct:    3 FTEKQEGLVKESWEVLKQDIPHSSLRFFSLILEIAPGAKNMFSFLRESEEIPQNNPKLKAHAVKVFKMTCESAIQLREKGEVVVADTTLKYLGTVHVKSGVKDPHFEVVKEALLRTIE 120          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBL0_PHYPA (Non-symbiotic hemoglobin 0 OS=Physcomitrella patens GN=GLB0 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.119e-25
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 1
Query:   82 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            + +++E E LV +SW ++KK+A   G+ FF ++FEIAP A+ ++SFLRDS +P E+N K+K HA  VF+MT ++AVQL + G   V ES  +KL A H   GV ++ FE+ K ++L  I+
Sbjct:   22 KTYSKENEQLVKQSWEILKKDAQRNGINFFRKVFEIAPGAKAMYSFLRDSTIPFEENPKVKNHARYVFMMTGDAAVQLGEKGAYQVLESKLQKLAATHVNAGVTDDQFEIVKEAILYAIE 141          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            A TE QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G+     +T K+LG++H K  + + HFEV K +LL TIK
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIK 120          
The following BLAST results are available for this feature:
BLAST of CX309133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL_HORVU2.662e-4471.19Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL1_ORYSJ1.725e-4368.91Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL3_ORYSJ4.250e-4268.64Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL4_ORYSJ4.699e-4166.95Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]
HBL2_ARATH1.675e-3054.24Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana... [more]
HBL2_BRANA2.857e-3053.39Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB... [more]
HBL2_SOLLC9.191e-2953.39Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum... [more]
HBL2_GOSHI9.191e-2954.24Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum G... [more]
HBL0_PHYPA2.119e-2545.00Non-symbiotic hemoglobin 0 OS=Physcomitrella paten... [more]
HBPA_CASGL1.163e-2347.06Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC21008H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309133 ID=CX309133; Name=CX309133; organism=Citrus clementina; type=EST; length=442bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGC
AAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCAAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAG
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