CX309133

Overview
NameCX309133
Unique NameCX309133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length442
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:262..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: HBP1_CASGL (Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            A TE+QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G      +T K+LG++H K  + + HFEV K +LL TIK
Sbjct:    2 ALTEKQEALLKQSWEVLKQNIPAHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGHAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIK 120          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB_CANLI (Leghemoglobin OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 56/119 (47.06%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            AF+E+QE+LV  SW   K+N       F+  I E AP+AQ +FSFL +   P   N KLK HA  VF MT +SAVQLR  G+V + + T   LG+VH + GV++ HF V K +LL+T K
Sbjct:    3 AFSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGVDP--NNPKLKAHAEKVFKMTVDSAVQLRAKGEVVLADPT---LGSVHVQKGVLDPHFLVVKEALLKTFK 116          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_MEDTR (Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 57/118 (48.31%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  SW + K+N G   L F+  I E AP+A+ +FSFL+D+   ++ + KL+ HA  VF M  +SAVQLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIK
Sbjct:    3 FTEKQEALVNSSWELFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDT-AGVQDSPKLQSHAEKVFGMVRDSAVQLRATGGVVLGDAT---LGAIHIQKGVVDPHFVVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB3_PEA (Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 7.799e-20
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V V ++T   LGA+H + GVV+ HF V K +LLETIK
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVVGDAT---LGAIHIQKGVVDPHFVVVKEALLETIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB6_PEA (Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.737e-19
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + ++T   LGA+H + GVV+ HF V K +LLETIK
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDAT---LGAIHIQKGVVDPHFVVVKEALLETIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB3_MEDSA (Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.964e-19
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  SW   K+N G   L F+  I E AP+A+ +FSFL+DS   ++ + KL+ HA  VF M  +SA QLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIK
Sbjct:    3 FTDKQEALVNSSWESFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDS-AGVQDSPKLQSHAEKVFGMVRDSAAQLRATGGVVLGDAT---LGAIHIQKGVVDPHFAVVKEALLKTIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB5_PEA (Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.870e-19
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT++QEALV  SW + K+N G   + F+  I + AP+ + +FSFL+DS   +  + KL+ HA  VF M  +SAVQLR +G+V + ++T   LGA+H + GVV+ HF V K +LLETIK
Sbjct:    3 FTDKQEALVNSSWELFKQNPG-YSVLFYNIILKKAPATKGMFSFLKDS-AGVVDSPKLQAHAEKVFGMVHDSAVQLRVSGEVVLGDAT---LGAIHIQKGVVDSHFVVVKEALLETIK 115          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB4_MEDSA (Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.870e-19
Identity = 53/118 (44.92%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   88 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            FT +QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   ++ + +L+ HA  VF M  +SAVQLR  G+V + ++T   LG++H + GVV+ HF V K +LL+TIK
Sbjct:    3 FTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDS-AGVQDSPQLQAHAEKVFGMVRDSAVQLRATGEVVLGDAT---LGSIHIQKGVVDPHFVVVKEALLKTIK 116          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB2_LUPLU (Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.870e-19
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            A TE Q ALV  SW     N  +   +FF+ + EIAP+A+ LFSFL+ ++   + N +L+ HA  VF +  E+A+QL+  G V V ++T K LG+VH   GV + HF V K ++L+TIK
Sbjct:    3 ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLQVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIK 120          
BLAST of CX309133 vs. ExPASy Swiss-Prot
Match: LGB1_MEDSA (Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-19
Identity = 52/119 (43.70%), Postives = 78/119 (65.55%), Query Frame = 1
Query:   85 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTQKKLGAVHFKYGVVNEHFEVTKFSLLETIK 441
            +FT++QEALV  SW   K+N     + F+  + E AP+A+ LFSFL++S   ++ + +L+ HA  VF +  +SAVQLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIK
Sbjct:    2 SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVVLEKAPAAKGLFSFLKNS-AEVQDSPQLQAHAEKVFGLVRDSAVQLRATGGVVLGDAT---LGAIHVRKGVVDPHFVVVKEALLKTIK 116          
The following BLAST results are available for this feature:
BLAST of CX309133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBP1_CASGL1.163e-2347.06Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2[more]
LGB_CANLI4.572e-2047.06Leghemoglobin OS=Canavalia lineata PE=2 SV=1[more]
LGB2_MEDTR5.971e-2048.31Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2... [more]
LGB3_PEA7.799e-2047.46Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3[more]
LGB6_PEA1.737e-1946.61Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3[more]
LGB3_MEDSA2.964e-1947.46Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1[more]
LGB5_PEA3.870e-1946.61Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3[more]
LGB4_MEDSA3.870e-1944.92Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1[more]
LGB2_LUPLU3.870e-1942.86Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2[more]
LGB1_MEDSA5.055e-1943.70Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21008H10Rv AbsLeaSub1 Citrus clementina cDNA clone C21008H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309133 ID=CX309133; Name=CX309133; organism=Citrus clementina; type=EST; length=442bp
GCGGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCA
AAAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGC
AAGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGA
GAATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGC
CCAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGA
ACCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAA
TCAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAAC
TCAAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGC
ATTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAG
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